Evidence map›Paper›PMID 33313558›Full record

ArticlePlant phenomics (Washington, D.C.)2020

Latent Space Phenotyping: Automatic Image-Based Phenotyping for Treatment Studies.

Jordan Ubbens, Mikolaj Cieslak, Przemyslaw Prusinkiewicz, Isobel Parkin, Jana Ebersbach, Ian Stavness

Open access · goldAbstract read
In one paragraph

Article in Plant phenomics (Washington, D.C.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 46 citations in OpenAlex.

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  12. Explainable deep learning in plant phenotyping.Frontiers in artificial intelligence · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jordan UbbensDepartment of Computer Science, University of Saskatchewan, Canada.ORCID https://orcid.org/0000-0002-3162-5252
Mikolaj CieslakDepartment of Computer Science, University of Calgary, Canada.ORCID https://orcid.org/0000-0003-2138-6865
Przemyslaw PrusinkiewiczDepartment of Computer Science, University of Calgary, Canada.
Isobel ParkinAgriculture and Agri-Food Canada, Saskatoon, SK, Canada.ORCID https://orcid.org/0000-0002-5807-9466
Jana EbersbachAgriculture and Agri-Food Canada, Saskatoon, SK, Canada.ORCID https://orcid.org/0000-0002-2528-8325
Ian StavnessDepartment of Computer Science, University of Saskatchewan, Canada.ORCID https://orcid.org/0000-0002-2044-2565
Agriculture and Agri-Food Canada · CAUniversity of Calgary · CAUniversity of Saskatchewan · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Association mapping studies have enabled researchers to identify candidate loci for many important environmental tolerance factors, including agronomically relevant tolerance traits in plants. However, traditional genome-by-environment studies such as these require a phenotyping pipeline which is capable of accurately measuring stress responses, typically in an automated high-throughput context using image processing. In this work, we present Latent Space Phenotyping (LSP), a novel phenotyping method which is able to automatically detect and quantify response-to-treatment directly from images. We demonstrate example applications using data from an interspecific cross of the model C

Identifiers

PMID33313558
PMCPMC7706325
OpenAlexW3002497963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.