Evidence map›Paper›PMID 33313308›Full record

ArticleERJ open research2020

Microarray analysis identifies defects in regenerative and immune response pathways in COPD airway basal cells.

Fanny Pineau, Gabriella Shumyatsky, Nicole Owuor, Nisha Nalamala, Sudhir Kotnala, Sudhir Bolla, Nathaniel Marchetti, Steven Kelsen, Gerard J Criner, Uma S Sajjan

Open access · goldAbstract read
In one paragraph

Article in ERJ open research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Fanny PineauDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Gabriella ShumyatskyDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Nicole OwuorDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Nisha NalamalaDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Sudhir KotnalaDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Sudhir BollaDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Nathaniel MarchettiDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Steven KelsenDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Gerard J CrinerDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.
Uma S SajjanDept of Thoracic Surgery and Medicine, Temple University, Philadelphia, PA, USA.ORCID https://orcid.org/0000-0003-4967-413X
Temple University · US

Funding

Quercetin prevents progression of COPD lung disease by modulating Foxo3AactivityR01AT007620 · NCCIH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SAJJAN, UMADEVI SIVANAPPA · 2014 to 2018
$2.0M
NCCIH NIH HHS R01 AT007620
6 · The paper itself

Abstract

backgroundAirway basal cells are specialised stem cells and regenerate airway epithelium. Airway basal cells isolated from patients with COPD regenerate airway epithelium with an abnormal phenotype. We performed gene expression analysis to gain insights into the defective regenerative programme in COPD basal cells.

methodsWe conducted microarray analysis and compared COPD

resultsComparison of normal and COPD basal cell transcriptomic profiles highlighted downregulation of genes associated with tissue development, epithelial cell differentiation and antimicrobial humoral response. Expression of one of the tissue development genes,

conclusionsDefect in gene signatures involved in tissue development and epithelial differentiation were implicated in COPD basal cells. One of the tissue developmental genes, HOXB2, is substantially reduced in bronchial epithelium of COPD patients. Since HOXB2 contributes to airway epithelial cell polarisation, we speculate that reduced expression of HOXB2 in COPD may contribute to abnormal airway epithelial regeneration in COPD.

Identifiers

PMID33313308
PMCPMC7720690
OpenAlexW3094308535

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.