Evidence map›Paper›PMID 33310759›Full record

ArticleLife science alliance2021

Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK-driven lymphomagenesis.

Elisa Redl, Raheleh Sheibani-Tezerji, Crhistian de Jesus Cardona, Patricia Hamminger, Gerald Timelthaler, Melanie Rosalia Hassler, Maša Zrimšek, Sabine Lagger, Thomas Dillinger, Lorena Hofbauer and 11 more

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 3 countries.

Elisa RedlDepartment of Pathology, Medical University of Vienna, Vienna, Austria.
Raheleh Sheibani-TezerjiLudwig Boltzmann Institute Applied Diagnostics (LBI AD), Vienna, Austria.
Crhistian de Jesus CardonaEberhard Karls University of Tübingen, Faculty of Mathematics and Natural Sciences, Tübingen, Germany.ORCID 0000-0003-1925-5188
Patricia HammingerDivision of Immunobiology, Institute of Immunology, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria.
Gerald TimelthalerInstitute of Cancer Research, Medical University of Vienna, Vienna, Austria.
Melanie Rosalia HasslerDepartment of Pathology, Medical University of Vienna, Vienna, Austria.
Maša ZrimšekDepartment of Pathology, Medical University of Vienna, Vienna, Austria.
Sabine LaggerUnit of Laboratory Animal Pathology, University of Veterinary Medicine Vienna, Vienna, Austria.ORCID 0000-0002-3032-9910
Thomas DillingerDepartment of Pathology, Medical University of Vienna, Vienna, Austria.
Lorena HofbauerDepartment of Pathology, Medical University of Vienna, Vienna, Austria.
Kristina DraganićDepartment of Pathology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0002-3351-242X
Andreas TiefenbacherDepartment of Pathology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0001-7410-6164
Michael KothmayerCenter for Anatomy and Cell Biology, Medical University of Vienna, Vienna, Austria.
Charles H DietzCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Bernard H RamsahoyeCentre for Genetic and Experimental Medicine, Institute of Genomic and Molecular Medicine, University of Edinburgh, Edinburgh, UK.
Lukas KennerDepartment of Pathology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0003-2184-1338
Christoph BockCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Christian SeiserCenter for Anatomy and Cell Biology, Medical University of Vienna, Vienna, Austria.
Wilfried EllmeierDivision of Immunobiology, Institute of Immunology, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria.
Gabriele SchweikertMax Planck Institute for Intelligent Systems, Tübingen, Germany.
Gerda EggerDepartment of Pathology, Medical University of Vienna, Vienna, Austria gerda.egger@meduniwien.ac.at.ORCID 0000-0003-2489-155X
Medical University of Vienna · ATLudwig Boltzmann Institute Applied Diagnostics · ATAustrian Academy of Sciences · ATUniversity of Veterinary Medicine Vienna · ATEdinburgh Cancer Research · GBResearch Institute of Molecular Pathology · ATUniversity of Dundee · GBUniversity of Tübingen · DE

Funding

Austrian Science Fund FWF I 4066Austrian Science Fund FWF P 27616
6 · The paper itself

Abstract

Malignant transformation depends on genetic and epigenetic events that result in a burst of deregulated gene expression and chromatin changes. To dissect the sequence of events in this process, we used a T-cell-specific lymphoma model based on the human oncogenic nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) translocation. We find that transformation of T cells shifts thymic cell populations to an undifferentiated immunophenotype, which occurs only after a period of latency, accompanied by induction of the MYC-NOTCH1 axis and deregulation of key epigenetic enzymes. We discover aberrant DNA methylation patterns, overlapping with regulatory regions, plus a high degree of epigenetic heterogeneity between individual tumors. In addition, ALK-positive tumors show a loss of associated methylation patterns of neighboring CpG sites. Notably, deletion of the maintenance DNA methyltransferase DNMT1 completely abrogates lymphomagenesis in this model, despite oncogenic signaling through NPM-ALK, suggesting that faithful maintenance of tumor-specific methylation through DNMT1 is essential for sustained proliferation and tumorigenesis.

Indexed as

Epigenesis, GeneticAnimalsBiomarkers, TumorCell Transformation, NeoplasticComputational BiologyDisease Models, AnimalDisease SusceptibilityDNA (Cytosine-5-)-Methyltransferase 1DNA MethylationEpigenomicsGene DeletionGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansImmunohistochemistryImmunophenotypingBiomarkers, TumorDNA (Cytosine-5-)-Methyltransferase 1DNMT1 protein, humanp80(NPM-ALK) proteinProtein-Tyrosine KinasesSTAT3 Transcription Factor

Identifiers

PMID33310759
PMCPMC7768196
OpenAlexW3113352145

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.