Evidence map›Paper›PMID 33310704›Full record

ArticleThe Journal of biological chemistry

Kinetic and thermodynamic analysis defines roles for two metal ions in DNA polymerase specificity and catalysis.

Shanzhong Gong, Serdal Kirmizialtin, Adrienne Chang, Joshua E Mayfield, Yan Jessie Zhang, Kenneth A Johnson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Molecular Characterization of a DNA Polymerase fromInternational journal of molecular sciences · 2022
    Article
  9. Article
  10. Catalytic Magnesium as a Door Stop for DNA Sliding.The journal of physical chemistry. B · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Shanzhong GongDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Serdal KirmizialtinChemistry Program, Science Division, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates.
Adrienne ChangChemistry Program, Science Division, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates.
Joshua E MayfieldDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Yan Jessie ZhangDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Kenneth A JohnsonDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA. Electronic address: kajohnson@utexas.edu.
The University of Texas at Austin · USNew York University Abu Dhabi · AE

Funding

Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Dynamics of Hepatis C viral RNA-dependent RNA replicationR01AI110577 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI JOHNSON, KENNETH ALLEN · 2015 to 2018
$1.8M
Correlating defects in mitochondrial DNA replication to physiologyR01GM114223 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI JOHNSON, KENNETH ALLEN · 2015 to 2018
$1.5M
Interpretation of the phosphorylation code of RNA polymerase II during eukaryotic transcriptionR01GM125882 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S., ZHANG, YAN JESSIE · 2018 to 2021
$1.4M
NIAID NIH HHS R01 AI110577NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R01 GM114223NIGMS NIH HHS R01 GM125882
6 · The paper itself

Abstract

Magnesium ions play a critical role in catalysis by many enzymes and contribute to the fidelity of DNA polymerases through a two-metal ion mechanism. However, specificity is a kinetic phenomenon and the roles of Mg

Indexed as

Cations, DivalentHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansKineticsMagnesiumMolecular Dynamics SimulationProtein ConformationThermodynamicsCations, DivalentHIV Reverse TranscriptaseMagnesiumconformational changeDNA replicationenzyme catalysisenzyme specificityinduced fitmagnesiummetal ionsmolecular dynamicstransient kinetics

Identifiers

PMID33310704
PMCPMC7948414
OpenAlexW3112404618

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.