Evidence map›Paper›PMID 33308178›Full record

ArticleBMC infectious diseases2020

Genetic association study of interferon lambda 3, CD27, and human leukocyte antigen-DPB1 with dengue severity in Thailand.

Unchana Arayasongsak, Izumi Naka, Jun Ohashi, Jintana Patarapotikul, Pornlada Nuchnoi, Thareerat Kalambaheti, Areerat Sa-Ngasang, Sumalee Chanama, Suwanna Chaorattanakawee

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Serum Cortisol as a Biomarker of Severe Dengue.Tropical medicine and infectious disease · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Unchana ArayasongsakDepartment of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Ratchawithi Road, Bangkok, 10400, Thailand.
Izumi NakaLaboratory of Human Genome Diversity, Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Jun OhashiLaboratory of Human Genome Diversity, Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Jintana PatarapotikulDepartment of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Ratchawithi Road, Bangkok, 10400, Thailand.
Pornlada NuchnoiDepartment of Clinical Microscopy, Faculty of Medical Technology, Mahidol University, Bangkok, 10700, Thailand.
Thareerat KalambahetiDepartment of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Ratchawithi Road, Bangkok, 10400, Thailand.
Areerat Sa-NgasangNational Institute of Health, Department of Medical Sciences, Ministry of Public Health, Nonthaburi, Thailand.
Sumalee ChanamaNational Institute of Health, Department of Medical Sciences, Ministry of Public Health, Nonthaburi, Thailand.
Suwanna ChaorattanakaweeDepartment of Parasitology and Entomology, Faculty of Public Health, Mahidol University, Ratchawithi Road, Bangkok, 10400, Thailand. suwanna.cho@mahidol.ac.th.ORCID http://orcid.org/0000-0003-4532-8416
Mahidol University · THMinistry of Public Health · THThe University of Tokyo · JP

Funding

Japan Society for the Promotion of Science 18KT0066Royal Golden Jubilee (RGJ) Ph.D. Programme (TH) PHD/0169/2556
6 · The paper itself

Abstract

backgroundDengue patients develop different disease severity ranging from mild (dengue fever [DF]) to severe forms (dengue hemorrhagic fever [DHF] and the fatal dengue shock syndrome [DSS]). Host genetics are considered to be one factor responsible for the severity of dengue outcomes. To identify genes associated with dengue severity that have not been studied yet, we performed genetic association analyses of interferon lambda 3 (IFNL3), CD27, and human leukocyte antigen-DPB1 (HLA-DPB1) genes in Thai dengue patients.

methodsA case-control association study was performed in 877 children (age ≤ 15 years) with dengue infection (DF, n = 386; DHF, n = 416; DSS, n = 75). A candidate single nucleotide polymorphism of each of IFNL3, CD27, and HLA-DPB1 was selected to be analyzed. Genotyping was performed by TaqMan real-time PCR assay, and the association with dengue severity was examined.

resultsThe rs9277534 variant of HLA-DPB1 was weakly associated with DHF. The genotype GG and G allele conferred protection against DHF (p = 0.04, odds ratio 0.74 for GG genotype, p = 0.03, odds ratio 0.79 for G allele). The association became borderline significant after adjusting for confounders (p = 0.05, odds ratio 0.82). No association was detected for IFNL3 or CD27.

conclusionsThe present study demonstrated the weak association of the rs9277534 variant of HLA-DPB1 with protection against DHF. This variant is in the 3' untranslated region and affects HLA-DPB1 surface protein expression. Our finding suggests that HLA-DPB1 may be involved in DHF pathogenesis.

Indexed as

Severity of Illness Index3' Untranslated RegionsAdolescentAllelesCase-Control StudiesChildDengue VirusFemaleGenetic Association StudiesGenotypeHLA-DP beta-ChainsHumansInterferon LambdaInterferonsInterleukinsMale3' Untranslated RegionsHLA-DPB1 antigenHLA-DP beta-ChainsInterferon Lambdainterferon-lambda, humanInterferonsInterleukinsTumor Necrosis Factor Receptor Superfamily, Member 7CD27DengueDisease severityGenetic associationHLA-DPB1IFNL3

Identifiers

PMID33308178
PMCPMC7731073
OpenAlexW3111522559

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.