Evidence map›Paper›PMID 33308144›Full record

ArticleBMC genomics2020

RNA sequencing identifies transcriptional changes in the rabbit larynx in response to low humidity challenge.

Taylor W Bailey, Andrea Pires Dos Santos, Naila Cannes do Nascimento, Shaojun Xie, Jyothi Thimmapuram, M Preeti Sivasankar, Abigail Cox

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Taylor W BaileyDepartment of Comparative Pathobiology, Purdue University, West Lafayette, IN, 47907, USA.
Andrea Pires Dos SantosDepartment of Comparative Pathobiology, Purdue University, West Lafayette, IN, 47907, USA.
Naila Cannes do NascimentoDepartment of Speech, Language, and Hearing Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Shaojun XieBioinformatics Core, Purdue University, West Lafayette, Indiana, 47907, USA.
Jyothi ThimmapuramBioinformatics Core, Purdue University, West Lafayette, Indiana, 47907, USA.
M Preeti SivasankarDepartment of Speech, Language, and Hearing Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Abigail CoxDepartment of Comparative Pathobiology, Purdue University, West Lafayette, IN, 47907, USA. adcox@purdue.edu.ORCID http://orcid.org/0000-0003-2262-8168
Purdue University West Lafayette · US

Funding

Pathobiology and biomechanics of vocal fold dehydrationR01DC015545 · NIDCD · PURDUE UNIVERSITY · PI COX, ABIGAIL, SIVASANKAR, PREETI M. · 2016 to 2020
$1.6M
NIDCD NIH HHS R01DC0115545NIDCD NIH HHS R01 DC015545
6 · The paper itself

Abstract

backgroundVoice disorders are a worldwide problem impacting human health, particularly for occupational voice users. Avoidance of surface dehydration is commonly prescribed as a protective factor against the development of dysphonia. The available literature inconclusively supports this practice and a biological mechanism for how surface dehydration of the laryngeal tissue affects voice has not been described. In this study, we used an in vivo male New Zealand white rabbit model to elucidate biological changes based on gene expression within the vocal folds from surface dehydration. Surface dehydration was induced by exposure to low humidity air (18.6% + 4.3%) for 8 h. Exposure to moderate humidity (43.0% + 4.3%) served as the control condition. Ilumina-based RNA sequencing was performed and used for transcriptome analysis with validation by RT-qPCR.

resultsThere were 103 statistically significant differentially expressed genes identified through Cuffdiff with 61 genes meeting significance by both false discovery rate and fold change. Functional annotation enrichment and predicted protein interaction mapping showed enrichment of various loci, including cellular stress and inflammatory response, ciliary function, and keratinocyte development. Eight genes were selected for RT-qPCR validation. Matrix metalloproteinase 12 (MMP12) and macrophage cationic peptide 1 (MCP1) were significantly upregulated and an epithelial chloride channel protein (ECCP) was significantly downregulated after surface dehydration by RNA-Seq and RT-qPCR. Suprabasin (SPBN) and zinc activated cationic channel (ZACN) were marginally, but non-significantly down- and upregulated as evidenced by RT-qPCR, respectively.

conclusionsThe data together support the notion that surface dehydration induces physiological changes in the vocal folds and justifies targeted analysis to further explore the underlying biology of compensatory fluid/ion flux and inflammatory mediators in response to airway surface dehydration.

Indexed as

LarynxAnimalsGene Expression ProfilingHumidityMaleRabbitsSequence Analysis, RNAVocal CordsAirwayAnimal modelDehydrationIn vivoRNA-SeqVocal folds

Identifiers

PMID33308144
PMCPMC7733274
OpenAlexW3112038043

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.