Evidence map›Paper›PMID 33307036›Full record

ArticleThe American journal of pathology2021

Image-Based Machine Learning Algorithms for Disease Characterization in the Human Type 1 Diabetes Pancreas.

Xiaohan Tang, Irina Kusmartseva, Shweta Kulkarni, Amanda Posgai, Stephan Speier, Desmond A Schatz, Michael J Haller, Martha Campbell-Thompson, Clive H Wasserfall, Bart O Roep and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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  6. Quantitative temporal analysis of pancreatic islet T lymphocyte and macrophage infiltration heralded by serum IgE in congenic BioBreeding (BB) Gimap5Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2025
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  9. Advances in MRI of Chronic Pancreatitis.Advances in clinical radiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Xiaohan TangDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida; Department of Metabolism and Endocrinology, The Second Xiangya Hospital, Central South University, Changsha, China.
Irina KusmartsevaDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida.
Shweta KulkarniDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida.
Amanda PosgaiDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida.
Stephan SpeierPaul Langerhans Institute Dresden of the Helmholtz Zentrum München at the University Clinic Carl Gustav Carus of Technische Universität Dresden, Helmholtz Zentrum München, Neuherberg, Germany; Institute of Physiology, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany; German Center for Diabetes Research, München-Neuherberg, Germany.
Desmond A SchatzDepartment of Pediatrics, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida.
Michael J HallerDepartment of Pediatrics, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida.
Martha Campbell-ThompsonDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida; J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, Gainesville, Florida.
Clive H WasserfallDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida.
Bart O RoepDepartment of Diabetes Immunology, Diabetes and Metabolism Research Institute, City of Hope/Beckman Research Institute, Duarte, California.
John S KaddisDepartment of Diabetes Immunology, Diabetes and Metabolism Research Institute, City of Hope/Beckman Research Institute, Duarte, California; Department of Diabetes and Cancer Discovery Science, Diabetes and Metabolism Research Institute, City of Hope/Beckman Research Institute, Duarte, California.
Mark A AtkinsonDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida; Department of Pediatrics, College of Medicine, University of Florida Diabetes Institute, Gainesville, Florida. Electronic address: atkinson@ufl.edu.
University of Florida · USCity of Hope · USCentral South University · CNHelmholtz Zentrum München · DE

Funding

Project 3P01AI042288 · NIAID · UNIVERSITY OF FLORIDA · PI Todd Michael Brusko · 1997 to 2026
$32.9M
Renewal of the Human Islet Research Enhancement Center (HIREC) for the Type-1-Diabetes-Focused Human Islet Research Network (HIRN).U24DK104162 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI John S. Kaddis, Joyce Carol Niland · 2019 to 2026
$12.3M
Pathways and Regulators Driving Progressive Islet Cell Dysfunction in Type 1 DiabetesR01DK122160 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI ROHIT N. KULKARNI, CLAYTON E MATHEWS · 2019 to 2026
$3.7M
Single-Cell Analyses of Human Islets in T1D Using Highly Multiplexed ImagingUC4DK108132 · NIDDK · UNIVERSITY OF FLORIDA · PI ATKINSON, MARK A., BODENMILLER, BERND · 2015 to 2015
$3.6M
Understanding pancreatic endocrine and exocrine loss in pre-type 1 diabetesR01DK123329 · NIDDK · UNIVERSITY OF FLORIDA · PI CAMPBELL-THOMPSON, MARTHA, HALLER, MICHAEL JAMES · 2020 to 2024
$2.6M
Human Islet Research Network Bioinformatics CenterU01DK104147 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI KADDIS, JOHN S., NILAND, JOYCE CAROL · 2014 to 2018
$2.5M
Role of Proximal Tubule NHE3 in Angiotensin II-induced HypertensionR01DK102429 · NIDDK · UNIVERSITY OF MISSISSIPPI MED CTR · PI ZHUO, JIA LONG · 2014 to 2021
$2.5M
Neuromodulation-based treatment of diabetes: identifying anatomical and physiological pancreatic innervation targetsOT2OD023861 · OD · UNIVERSITY OF FLORIDA · PI CAMPBELL-THOMPSON, MARTHA · 2016 to 2018
$1.7M
Regional and lobular heterogeneity of human pancreas morphology and function in type 1 diabetes pathogenesisR01DK123292 · NIDDK · UNIVERSITY OF FLORIDA · PI ATKINSON, MARK A., SPEIER, STEPHAN · 2020 to 2023
$1.7M
NIAID NIH HHS P01 AI042288NIDDK NIH HHS R01 DK102429NIDDK NIH HHS R01 DK122160NIDDK NIH HHS R01 DK123292NIDDK NIH HHS R01 DK123329NIDDK NIH HHS U01 DK104147NIDDK NIH HHS U24 DK104162NIDDK NIH HHS UC4 DK108132NIH HHS OT2 OD023861
6 · The paper itself

Abstract

Emerging data suggest that type 1 diabetes affects not only the β-cell-containing islets of Langerhans, but also the surrounding exocrine compartment. Using digital pathology, machine learning algorithms were applied to high-resolution, whole-slide images of human pancreata to determine whether the tissue composition in individuals with or at risk for type 1 diabetes differs from those without diabetes. Transplant-grade pancreata from organ donors were evaluated from 16 nondiabetic autoantibody-negative controls, 8 nondiabetic autoantibody-positive subjects with increased type 1 diabetes risk, and 19 persons with type 1 diabetes (0 to 12 years' duration). HALO image analysis algorithms were implemented to compare architecture of the main pancreatic duct as well as cell size, density, and area of acinar, endocrine, ductal, and other nonendocrine, nonexocrine tissues. Type 1 diabetes was found to affect exocrine area, acinar cell density, and size, whereas the type of difference correlated with the presence or absence of insulin-positive cells remaining in the pancreas. These changes were not observed before disease onset, as indicated by modeling cross-sectional data from pancreata of autoantibody-positive subjects and those diagnosed with type 1 diabetes. These data provide novel insights into anatomic differences in type 1 diabetes pancreata and demonstrate that machine learning can be adapted for the evaluation of disease processes from cross-sectional data sets.

Indexed as

AlgorithmsMachine LearningAdolescentAutoantibodiesCase-Control StudiesDiabetes Mellitus, Type 1FemaleHumansImage Processing, Computer-AssistedInsulinPancreasTissue DonorsAutoantibodiesInsulin

Identifiers

PMID33307036
PMCPMC7919855
OpenAlexW3110649841

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.