Evidence map›Paper›PMID 33306870›Full record

ArticleMolecular genetics & genomic medicine2021

Defective INPP5E distribution in NPHP1-related Senior-Loken syndrome.

Ke Ning, Emilie Song, Brent E Sendayen, Philipp P Prosseda, Kun-Che Chang, Alireza Ghaffarieh, Jorge A Alvarado, Biao Wang, Kathryn M Haider, Nicolas F Berbari and 2 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Molecular genetics & genomic medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Primary Cilia of Astrocytes in the Retina in Development and Disease.Investigative ophthalmology & visual science · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Regulation of INPP5E in Ciliogenesis, Development, and Disease.International journal of biological sciences · 2025
    Review
  7. Article
  8. Patient-derived and gene-edited pluripotent stem cells lackingFrontiers in cell and developmental biology · 2024
    Article
  9. Clinical case reports · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Primary Cilia in Amacrine Cells in Retinal Development.Investigative ophthalmology & visual science · 2021
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Ke NingDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Emilie SongDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Brent E SendayenDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Philipp P ProssedaDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Kun-Che ChangDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-0871-5612
Alireza GhaffariehMass Eye and Ear Infirmary, Harvard School of Medicine, Boston, MA, USA.
Jorge A AlvaradoDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Biao WangDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Kathryn M HaiderDepartment of Ophthalmology, Indiana University School of Medicine, Indianapolis, IN, USA.
Nicolas F BerbariDepartment of Biology, Indiana University Purdue University in Indianapolis, Indianapolis, IN, USA.
Yang HuDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.
Yang SunDepartment of Ophthalmology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-8735-4765
Stanford University · USIndiana University School of MedicineMassachusetts Eye and Ear Infirmary · USPalo Alto Veterans Institute for Research · USUniversity of Indianapolis · US

Funding

Stanford Vision Research CoreP30EY026877 · NEI · STANFORD UNIVERSITY · PI Jeffrey L Goldberg · 2017 to 2026
$8.0M
University of Chicago Initiative for Maximizing Student Development (IMSD) - Renewal 01R25GM109439 · NIGMS · UNIVERSITY OF CHICAGO · PI SCHWARTZ, NANCY B · 2014 to 2023
$5.7M
Elucidating Neuron-Intrinsic Molecular Mechanisms of Optic Nerve RegenerationR01EY024932 · NEI · TEMPLE UNIV OF THE COMMONWEALTH · PI Yang Hu · 2015 to 2026
$4.8M
Neuroprotection by Modulating ER Stress in GlaucomaR01EY023295 · NEI · TEMPLE UNIV OF THE COMMONWEALTH · PI HU, YANG · 2013 to 2022
$3.8M
The role of primary cilia in glaucoma pathogenesisR01EY025295 · NEI · STANFORD UNIVERSITY · PI Yang Sun · 2016 to 2026
$3.5M
How Hedgehog Contributes to Centrally Mediated Energy Homeostasis?R01DK114008 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI Nicolas F Berbari, Jeremy F Reiter · 2018 to 2026
$3.3M
Developing Novel Neuroprotective Strategies for EAE/Optic NeuritisR01EY028106 · NEI · STANFORD UNIVERSITY · PI HU, YANG · 2018 to 2021
$1.9M
Glaucoma Pathogenesis of Oculocerebrorenal syndrome of LoweK08EY022058 · NEI · STANFORD UNIVERSITY · PI SUN, YANG · 2012 to 2016
$994k
Role of growth and differentiation factors in retinal ganglion cell developmentF32EY029137 · NEI · STANFORD UNIVERSITY · PI CHANG, KUN-CHE · 2018 to 2020
$144k
NEI NIH HHS F32 EY029137NEI NIH HHS K08 EY022058NEI NIH HHS P30 EY026877NEI NIH HHS R01 EY023295NEI NIH HHS R01 EY024932NEI NIH HHS R01 EY025295NEI NIH HHS R01 EY028106NIDDK NIH HHS R01 DK114008NIGMS NIH HHS R25 GM109439
6 · The paper itself

Abstract

backgroundSenior-Loken syndrome is a rare genetic disorder that presents with nephronophthisis and retinal degeneration, leading to end-stage renal disease and progressive blindness. The most frequent cause of juvenile nephronophthisis is a mutation in the nephronophthisis type 1 (NPHP1) gene. NPHP1 encodes the protein nephrocystin-1, which functions at the transition zone (TZ) of primary cilia.

methodsWe report a 9-year-old Senior-Loken syndrome boy with NPHP1 deletion, who presents with bilateral vision decrease and cystic renal disease. Renal function deteriorated to require bilateral nephrectomy and renal transplant. We performed immunohistochemistry, H&E staining, and electron microscopy on the renal sample to determine the subcellular distribution of ciliary proteins in the absence of NPHP1.

resultsImmunohistochemistry and electron microscopy of the resected kidney showed disorganized cystic structures with loss of cilia in renal tubules. Phosphoinositides have been recently recognized as critical components of the ciliary membrane and immunostaining of kidney sections for phosphoinositide 5-phosphatase, INPP5E, showed loss of staining compared to healthy control. Ophthalmic examination showed decreased electroretinogram consistent with early retinal degeneration.

conclusionThe decreased expression of INPP5E specifically in the primary cilium, coupled with disorganized cilia morphology, suggests a novel role of NPHP1 that it is involved in regulating ciliary phosphoinositide composition in the ciliary membrane of renal tubular cells.

Indexed as

Adaptor Proteins, Signal TransducingChildCiliaCiliopathiesCytoskeletal ProteinsGene DeletionHumansKidneyKidney Diseases, CysticLeber Congenital AmaurosisMaleOptic Atrophies, HereditaryPhosphoinositide 5-PhosphatasesPhosphoric Monoester HydrolasesAdaptor Proteins, Signal TransducingCytoskeletal ProteinsNPHP1 protein, humanPhosphoinositide 5-PhosphatasesPhosphoric Monoester HydrolasesINPP5ENPHP1primary ciliaSenior-Loken syndrometransition zone

Identifiers

PMID33306870
PMCPMC7963418
OpenAlexW3111647953

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.