Evidence map›Paper›PMID 33303684›Full record

ArticleScience (New York, N.Y.)2021

Network-based screen in iPSC-derived cells reveals therapeutic candidate for heart valve disease.

Christina V Theodoris, Ping Zhou, Lei Liu, Yu Zhang, Tomohiro Nishino, Yu Huang, Aleksandra Kostina, Sanjeev S Ranade, Casey A Gifford, Vladimir Uspenskiy and 3 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 102 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Christina V TheodorisGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.ORCID https://orcid.org/0000-0003-1658-1447
Ping ZhouGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.
Lei LiuGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.
Yu ZhangGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.
Tomohiro NishinoGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.ORCID https://orcid.org/0000-0002-3593-7368
Yu HuangGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.
Aleksandra KostinaInstitute of Cytology, Russian Academy of Sciences, Saint Petersburg, Russia.ORCID https://orcid.org/0000-0002-1983-4609
Sanjeev S RanadeGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.
Casey A GiffordGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.ORCID https://orcid.org/0000-0002-7757-573X
Vladimir UspenskiyAlmazov Federal Medical Research Centre, Saint Petersburg, Russia.ORCID https://orcid.org/0000-0002-7929-0594
Anna MalashichevaInstitute of Cytology, Russian Academy of Sciences, Saint Petersburg, Russia.ORCID https://orcid.org/0000-0002-0820-2913
Sheng DingGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA.ORCID https://orcid.org/0000-0002-7525-2144
Deepak SrivastavaGladstone Institute of Cardiovascular Disease, San Francisco, CA, USA. dsrivastava@gladstone.ucsf.edu.ORCID https://orcid.org/0000-0002-3480-5953
Gladstone Institutes · USFederal Almazov North-West Medical Research Centre · RUInstitute of Cytology · RUSt Petersburg University · RU

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
Transcriptional Networks During Cardiac DifferentiationP01HL089707 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI SRIVASTAVA, DEEPAK · 2008 to 2017
$20.4M
CARDIOGENESIS--MOLECULAR MECHANISMSR01HL057181 · NHLBI · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI DEEPAK SRIVASTAVA · 1997 to 2026
$14.0M
Project 3: Control of cardiac transcription by MEF2 and myocardinP01HL146366 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI SRIVASTAVA, DEEPAK · 2019 to 2023
$13.7M
The Epigenetic Landscape of Heart DevelopmentU01HL098179 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BOYER, LAURIE A, BRUNEAU, BENOIT GAETAN · 2009 to 2014
$10.0M
Induced Pluripotent Stem Cells in the Understanding and Treatment of Heart DiseasU01HL100406 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN, CONKLIN, BRUCE R · 2009 to 2015
$9.4M
PREDOCTORAL TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007470 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Todd Nystul · 1994 to 2026
$7.7M
Training in Developmental Cardiovascular BiologyT32HL007544 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SRIVASTAVA, DEEPAK · 1985 to 2021
$4.5M
Aortic Valve Disease: Mechanisms and Therapeutic ApproachesR01HL150100 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI SRIVASTAVA, DEEPAK · 2020 to 2023
$2.7M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR018928 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI MAHLEY, ROBERT W. · 2003 to 2003
$2.1M
Howard Hughes Medical InstituteNCRR NIH HHS C06 RR018928NHLBI NIH HHS P01 HL089707NHLBI NIH HHS P01 HL146366NHLBI NIH HHS R01 HL057181NHLBI NIH HHS R01 HL150100NHLBI NIH HHS T32 HL007544NHLBI NIH HHS U01 HL098179NHLBI NIH HHS U01 HL100406NICHD NIH HHS T32 HD007470NIGMS NIH HHS T32 GM007618
6 · The paper itself

Abstract

Mapping the gene-regulatory networks dysregulated in human disease would allow the design of network-correcting therapies that treat the core disease mechanism. However, small molecules are traditionally screened for their effects on one to several outputs at most, biasing discovery and limiting the likelihood of true disease-modifying drug candidates. Here, we developed a machine-learning approach to identify small molecules that broadly correct gene networks dysregulated in a human induced pluripotent stem cell (iPSC) disease model of a common form of heart disease involving the aortic valve (AV). Gene network correction by the most efficacious therapeutic candidate, XCT790, generalized to patient-derived primary AV cells and was sufficient to prevent and treat AV disease in vivo in a mouse model. This strategy, made feasible by human iPSC technology, network analysis, and machine learning, may represent an effective path for drug discovery.

Indexed as

Machine LearningAlgorithmsAnimalsAortic ValveAortic Valve DiseaseAortic Valve StenosisCalcinosisDisease Models, AnimalDrug DiscoveryDrug Evaluation, PreclinicalGene Expression RegulationGene Regulatory NetworksHaploinsufficiencyHumansInduced Pluripotent Stem CellsMiceNitrilesNOTCH1 protein, humanNotch1 protein, mouseReceptor, Notch1Small Molecule LibrariesThiazolesXCT790

Identifiers

PMID33303684
PMCPMC7880903
OpenAlexW3112652901

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.