Evidence map›Paper›PMID 33303640›Full record

ArticleGenes & development2021

Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription.

Julius Judd, Fabiana M Duarte, John T Lis

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
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  4. Article
  5. Article
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  8. The Binding Landscape of an Essential Nuclear Hormone Receptor inbioRxiv : the preprint server for biology · 2025
    Article
  9. Article
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  11. Breaking anterior-posterior symmetry in the moth flybioRxiv : the preprint server for biology · 2025
    Article
  12. Review
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  15. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Julius JuddDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.ORCID 0000-0002-4602-0205
Fabiana M DuarteDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.
John T LisDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.ORCID 0000-0003-1201-9406
Cornell University · USHarvard University · US

Funding

COORDINATE GENE REGULATION IN ANIMAL CELLSR01GM025232 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIS, JOHN T · 1985 to 2020
$8.4M
High-throughput functional characterization of human enhancersUM1HG009393 · NHGRI · CORNELL UNIVERSITY · PI LIS, JOHN T, YU, HAIYUAN · 2017 to 2021
$4.1M
COORDINATE GENE REGULATION IN ANIMAL CELLSR37GM025232 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIS, JOHN THOMAS · 1995 to 2004
$2.5M
Interrogating Enhancer Function and Cooperation by Systematic Perturbation of Transposable ElementsF31HG010820 · NHGRI · CORNELL UNIVERSITY · PI JUDD, JULIUS A. · 2019 to 2021
$107k
NHGRI NIH HHS F31 HG010820NHGRI NIH HHS UM1 HG009393NIGMS NIH HHS R01 GM025232NIGMS NIH HHS R37 GM025232
6 · The paper itself

Abstract

Transcriptionally silent genes must be activated throughout development. This requires nucleosomes be removed from promoters and enhancers to allow transcription factor (TF) binding and recruitment of coactivators and RNA polymerase II (Pol II). Specialized pioneer TFs bind nucleosome-wrapped DNA to perform this chromatin opening by mechanisms that remain incompletely understood. Here, we show that GAGA factor (GAF), a

Indexed as

Adenosine TriphosphatasesAnimalsCell LineChromatin Assembly and DisassemblyDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsGene Expression RegulationProtein BindingRibonucleoprotein, U1 Small NuclearRNA Polymerase IITranscription Elongation, GeneticTranscription FactorsAdenosine TriphosphatasesDNA-Binding ProteinsDrosophila ProteinsISWI proteinRibonucleoprotein, U1 Small NuclearRNA Polymerase IIsnf protein, DrosophilaSWI protein, D melanogasterTranscription FactorsTrl protein, Drosophilachromatin remodelerspioneer factorspromoter-proximal pausingtranscription regulation

Identifiers

PMID33303640
PMCPMC7778264
OpenAlexW3112518979

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.