Evidence map›Paper›PMID 33302475›Full record

ArticleCells2020

RNA-Seq Analysis of Cisplatin and the Monofunctional Platinum(II) Complex, Phenanthriplatin, in A549 Non-Small Cell Lung Cancer and IMR90 Lung Fibroblast Cell Lines.

Jerry D Monroe, Satya A Moolani, Elvin N Irihamye, Joshua S Speed, Yann Gibert, Michael E Smith

Open access · goldAbstract read
In one paragraph

Article in Cells, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Jerry D MonroeDepartment of Cell and Molecular Biology, University of Mississippi Medical Center, Jackson, MS 39216, USA.
Satya A MoolaniDepartment of Biology, Western Kentucky University, Bowling Green, KY 42101-1080, USA.ORCID 0000-0001-8543-5799
Elvin N IrihamyeDepartment of Biology, Western Kentucky University, Bowling Green, KY 42101-1080, USA.
Joshua S SpeedDepartment of Physiology and Biophysics, University of Mississippi Medical Center, Jackson, MS 39216, USA.
Yann GibertDepartment of Cell and Molecular Biology, University of Mississippi Medical Center, Jackson, MS 39216, USA.
Michael E SmithDepartment of Biology, Western Kentucky University, Bowling Green, KY 42101-1080, USA.ORCID 0000-0002-2174-9825
University of Mississippi Medical Center · USCase Western Reserve University · USIndiana University Bloomington · USJackson Memorial Hospital · USWestern Kentucky University · US

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
Role of obesity in preeclamptic pregnancy.P20GM121334 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI Babbette LaMarca, Jane F Reckelhoff · 2017 to 2026
$26.4M
The role of leptin in autoimmune-associated hypertensionP20GM104357 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI TAYLOR, ERIN BASSFORD · 2013 to 2022
$23.4M
PILOT PROJECT PROGRAMP30GM106396 · NIGMS · UNIVERSITY OF LOUISVILLE · PI MILLER, DONALD M. · 2013 to 2017
$5.4M
Endothelin - Mechanisms in Hypertension and ObesityR00HL127178 · NHLBI · UNIVERSITY OF MISSISSIPPI MED CTR · PI SPEED, JOSHUA S · 2018 to 2020
$878k
Finding novel platinum(II) complex anti-cancer drugs with reduced ototoxicityR15CA188890 · NCI · WESTERN KENTUCKY UNIVERSITY · PI SMITH, MICHAEL E, WILLIAMS, KEVIN M · 2015 to 2015
$414k
NCI NIH HHS R15 CA188890NIGMS NIH HHS P20 GM103436NIGMS NIH HHS P20 GM104357NIGMS NIH HHS P20 GM121334NIGMS NIH HHS P30 GM106396NIH HHS P20 GM104357NIH HHS R00 HL127178
6 · The paper itself

Abstract

Phenanthriplatin is a new monofunctional platinum(II) complex that binds only one strand of DNA and acts by blocking gene transcription, but its effect on gene regulation has not been characterized relative to the traditional platinum-based complex, cisplatin. A549 non-small cell lung cancer and IMR90 lung fibroblast cells were treated with cisplatin, phenanthriplatin, or a control and then their RNA transcripts were subjected to next generation sequencing analysis. DESeq2 and CuffDiff2 were used to identify up- and downregulated genes and Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases were used to identify pathways and functions. We found that phenanthriplatin may regulate the genes GPRC5a, TFF1, and TNFRSF10D, which act through p53 to control apoptosis, differently or to a greater extent than cisplatin, and that it, unlike cisplatin, could upregulate ATP5MD, a gene which signals through the Wnt/β catenin pathway. Furthermore, phenanthriplatin caused unique or enhanced effects compared to cisplatin on genes regulating the cytoskeleton, cell migration, and proliferation, e.g., AGAP1, DIAPH2, GDF15, and THSD1 (

Indexed as

Activating Transcription Factor 3Carcinoma, Non-Small-Cell LungCell LineCisplatinCoordination ComplexesDown-RegulationFibroblastsHumansLungLung NeoplasmsOrganoplatinum CompoundsPhenanthridinesPhosphofructokinase-2PlatinumSequence Analysis, RNAUp-RegulationActivating Transcription Factor 3ATF3 protein, humanCisplatinCoordination ComplexesOrganoplatinum CompoundsPFKFB3 protein, humanPhenanthridinesphenanthriplatinPhosphofructokinase-2Platinumcancercisplatinmonofunctional platinum(II) complexnext generation sequencingpathway analysis

Identifiers

PMID33302475
PMCPMC7764052
OpenAlexW3112574011

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.