Evidence map›Paper›PMID 33302163›Full record

ArticleComputers in biology and medicine2021

A molecular docking study of EGCG and theaflavin digallate with the druggable targets of SARS-CoV-2.

Susmit Mhatre, Shivraj Naik, Vandana Patravale

Abstract read
In one paragraph

Article in Computers in biology and medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  10. Exploring the Therapeutic Potential ofMolecules (Basel, Switzerland) · 2024
    Article
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  18. Effects of theaflavin-gallatePhytomedicine plus : international journal of phytotherapy and phytopharmacology · 2022
    Article
  19. Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Susmit MhatreDepartment of Pharmaceutical Science and Technology, Institute of Chemical Technology, Mumbai, Nathalal Parekh Maarga, Matunga (E) Mumbai-19, Maharashtra, India.
Shivraj NaikDepartment of Pharmaceutical Science and Technology, Institute of Chemical Technology, Mumbai, Nathalal Parekh Maarga, Matunga (E) Mumbai-19, Maharashtra, India.
Vandana PatravaleDepartment of Pharmaceutical Science and Technology, Institute of Chemical Technology, Mumbai, Nathalal Parekh Maarga, Matunga (E) Mumbai-19, Maharashtra, India. Electronic address: vb.patravale@ictmumbai.edu.in.

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
NIGMS NIH HHS P41 GM103311
6 · The paper itself

Abstract

backgroundCOVID-19 is an infectious disease caused by a novel positive-sense single-stranded RNA coronavirus called as SARS-CoV-2. This viral disease is known to infect the respiratory system, eventually leading to pneumonia. Crystallographic studies of the viral structure reveal its mechanism of infection as well as active binding sites and the druggable targets as scope for treatment of COVID-19. HYPOTHESIS: The role of tea polyphenols in prophylaxis and treatment of COVID-19 was established in this study. STUDY

designMolecular docking interactions of tea polyphenols with some of the possible binding sites of SARS-CoV-2 were performed. MATERIALS AND

methodsFrom various studies on the SARS-CoV-2 reported in the literature, we chose possible drug targets (Chymotrypsin-like protease, RNA dependant RNA polymerase, Papain like protease, Spike RBD and ACE2 receptor with spike RBD) which are vital proteins. These receptors were docked against two tea polyphenols, Epigallocatechin gallate (EGCG) from green tea and Theaflavin digallate (TF3) from black tea. These polyphenols have been previously reviewed for their antiviral activities, especially against single-stranded RNA viruses. Two antiviral drugs, Remdesivir and Favipiravir were studied for comparative docking results.

resultsA comparative study of docking scores and the type of interactions of EGCG, TF3 with the possible targets of COVID-19 showed that the tea polyphenols had good docking scores with significant in-silico activity.

conclusionThese results can provide a lead in exploring both the tea polyphenols in prophylaxis as well as treatment of COVID-19.

Indexed as

Antiviral AgentsBiflavonoidsBinding SitesCatechinGallic AcidMolecular Docking SimulationSARS-CoV-2Antiviral AgentsBiflavonoidsCatechinepigallocatechin gallateGallic Acidtheaflavin digallateCOVID-19ECCGMolecular dockingTea polyphenolsTheaflavins

Identifiers

PMID33302163
PMCPMC7682485

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.