Evidence map›Paper›PMID 33301125›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Context-Specific and Proximity-Dependent Labeling for the Proteomic Analysis of Spatiotemporally Defined Protein Complexes with Split-BioID.

Cinthia Amaya Ramirez, Stefanie Egetemaier, Julien Béthune

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Cinthia Amaya RamirezCluster of excellence CellNetworks, Heidelberg University, Heidelberg, Germany.
Stefanie EgetemaierCluster of excellence CellNetworks, Heidelberg University, Heidelberg, Germany.
Julien BéthuneHamburg University of Applied Sciences, Hamburg, Germany. julien.bethune@haw-hamburg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proximity-dependent labeling techniques such as BioID and APEX2 allow the biotinylation of proteins proximal to a protein of interest in living cells. Following streptavidin pulldown and mass spectrometry analysis, this enables the identification of native protein-protein interactions. Here we describe split-BioID, a protein-fragment complementation assay that increases the resolution of BioID. Using this technique, context-specific protein complexes can be resolved.

Indexed as

ProteomeAnimalsBiotinylationCell LineCloning, MolecularElectrophoresis, Polyacrylamide GelGene ExpressionHumansMass SpectrometryProtein BindingProtein Interaction MappingProteinsProteomicsStaining and LabelingStreptavidinProteinsProteomeStreptavidinBioIDBiotinProtein-fragment complementation assayProtein–protein interactionsProteomics

Identifiers

PMID33301125

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.