ArticleMethods in molecular biology (Clifton, N.J.)2021
Retrotransposable Elements: DNA Fingerprinting and the Assessment of Genetic Diversity.
Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- SSR and IRAP-based genetic diversity analysis for core collection of Idesia polycarpa.BMC plant biology · 2026Article
- Genetic Diversity ofGenes · 2025Article
- Association analysis of response to take-all disease with agronomic traits and molecular markers and selection ideal genotypes in bread wheat (Molecular breeding : new strategies in plant improvement · 2025Article
- Genetic Evaluation and Population Structure of Jiangsu Native Pigs in China Revealed by SINE Insertion Polymorphisms.Animals : an open access journal from MDPI · 2022Article
- A Guide to Using FASTPCR Software for PCR, In Silico PCR, and Oligonucleotide Analysis.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress.Frontiers in plant science · 2022Review
- The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation.International journal of molecular sciences · 2021Review
- Primer Binding Site (PBS) Profiling of Genetic Diversity of Natural Populations of Endemic SpeciesBiotech (Basel (Switzerland)) · 2021Article
- Genetic Diversity and Pathogenicity ofJournal of fungi (Basel, Switzerland) · 2021Article
- Palindromic Sequence-Targeted (PST) PCR, Version 2: An Advanced Method for High-Throughput Targeted Gene Characterization and Transposon Display.Frontiers in plant science · 2021Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Retrotransposable elements (RTEs) are highly common mobile genetic elements that are composed of several classes and make up the majority of eukaryotic genomes. The "copy-out and paste-in" life cycle of replicative transposition in these dispersive and ubiquitous RTEs leads to new genome insertions without excision of the original element. RTEs are important drivers of species diversity; they exhibit great variety in structure, size, and mechanisms of transposition, making them important putative components in genome evolution. Accordingly, various applications have been developed to explore the polymorphisms in RTE insertion patterns. These applications include conventional or anchored polymerase chain reaction (PCR) and quantitative or digital PCR with primers designed for the 5' or 3' junction. Marker systems exploiting these PCR methods can be easily developed and are inexpensively used in the absence of extensive genome sequence data. The main inter-repeat amplification polymorphism techniques include inter-retrotransposon amplified polymorphism (IRAP), retrotransposon microsatellite amplified polymorphism (REMAP), and Inter-Primer Binding Site (iPBS) for PCR amplification with a single or two primers.
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