ArticleGigaScience2020
Chromosome-level draft genome of a diploid plum (Prunus salicina).
Article in GigaScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed.
- The telomere-to-telomere gap-free reference genome and DNA methylome unveil epigenetic regulation of proanthocyanidin biosynthesis during apricot fruit development.The Plant journal : for cell and molecular biology · 2026Article
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- Identification of phenological QTLs using a combination of high- and low-coverage whole genome sequencing in Japanese plum (Horticulture research · 2026Article
- Pollen donor selection modulates fruit quality, bioactive profiles, and antioxidant capacity in 'Fengtang' plum (Prunus salicina): links to endogenous hormonal regulation.BMC plant biology · 2025Article
- Comprehensive transcriptional analysis of ethylene and softening regulation in plums with distinct climacteric ripening behaviors.BMC plant biology · 2025Article
- A chromosome-scale and haplotype-resolved genome assembly of tetraploid blackberry (Horticulture research · 2025Article
- Haplotype-resolved genome assembly provides new insights into the genomic origin of purple colour in Prunus mume.Plant biotechnology journal · 2025Article
- Chromosome-level assembly of Prunus serrula Franch genome.Scientific data · 2025Article
- Novel insight of the SVP gene involved in pedicel length based on genomics analysis in cherry.Plant cell reports · 2025Article
- The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus.GigaScience · 2025Article
- Untying the knot: Unraveling genetic mechanisms behind black knot disease resistance inPlant-environment interactions (Hoboken, N.J.) · 2024Article
- Genome-Wide Association Study for Seed Yield of Tepary Bean Using Whole-Genome Resequencing.International journal of molecular sciences · 2024Article
- Comparative population genomics reveals convergent and divergent selection in the apricot-peach-plum-mei complex.Horticulture research · 2024Article
- Chlomito: a novel tool for precise elimination of organelle genome contamination from nuclear genome assembly.Frontiers in plant science · 2024Article
- The pan-plastome ofFrontiers in plant science · 2024Article
- The Physicochemical Attributes, Volatile Compounds, and Antioxidant Activities of Five Plum Cultivars in Sichuan.Foods (Basel, Switzerland) · 2023Article
- Integrated Cytological, Physiological, and Transcriptome Analyses Provide Insight into the Albino Phenotype of Chinese Plum (International journal of molecular sciences · 2023Article
- PsERF1B-PsMYB10.1-PsbHLH3 module enhances anthocyanin biosynthesis in the flesh-reddening of amber-fleshed plum (cv. Friar) fruit in response to cold storage.Horticulture research · 2023Article
- Genome-Wide Identification of theInternational journal of molecular sciences · 2023Article
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7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPlums are one of the most economically important Rosaceae fruit crops and comprise dozens of species distributed across the world. Until now, only limited genomic information has been available for the genetic studies and breeding programs of plums. Prunus salicina, an important diploid plum species, plays a predominant role in modern commercial plum production. Here we selected P. salicina for whole-genome sequencing and present a chromosome-level genome assembly through the combination of Pacific Biosciences sequencing, Illumina sequencing, and Hi-C technology.
findingsThe assembly had a total size of 284.2 Mb, with contig N50 of 1.78 Mb and scaffold N50 of 32.32 Mb. A total of 96.56% of the assembled sequences were anchored onto 8 pseudochromosomes, and 24,448 protein-coding genes were identified. Phylogenetic analysis showed that P. salicina had a close relationship with Prunus mume and Prunus armeniaca, with P. salicina diverging from their common ancestor ∼9.05 million years ago. During P. salicina evolution 146 gene families were expanded, and some cell wall-related GO terms were significantly enriched. It was noteworthy that members of the DUF579 family, a new class involved in xylan biosynthesis, were significantly expanded in P. salicina, which provided new insight into the xylan metabolism in plums.
conclusionsWe constructed the first high-quality chromosome-level plum genome using Pacific Biosciences, Illumina, and Hi-C technologies. This work provides a valuable resource for facilitating plum breeding programs and studying the genetic diversity mechanisms of plums and Prunus species.
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