Evidence map›Paper›PMID 33300287›Full record

ArticleEMBO reports2021

Tnfaip2/exoc3-driven lipid metabolism is essential for stem cell differentiation and organ homeostasis.

Sarmistha Deb, Daniel A Felix, Philipp Koch, Maharshi Krishna Deb, Karol Szafranski, Katrin Buder, Mara Sannai, Marco Groth, Joanna Kirkpatrick, Stefan Pietsch and 6 more

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Sarmistha DebLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.ORCID 0000-0002-2702-3881
Daniel A FelixLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.
Philipp KochLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.ORCID 0000-0003-2825-7943
Maharshi Krishna DebLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.ORCID 0000-0003-0026-6194
Karol SzafranskiLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.ORCID 0000-0001-6391-1766
Katrin BuderLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.
Mara SannaiLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.
Marco GrothLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.ORCID 0000-0002-9199-8990
Joanna KirkpatrickLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.
Stefan PietschLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.
André GollowitzerInstitute of Pharmacy, Friedrich-Schiller-University, Jena, Germany.ORCID 0000-0003-1524-8298
Alexander GroßInstitute of Medical Systems Biology, Ulm University, Ulm, Germany.ORCID 0000-0001-5641-0680
Philip RiemenschneiderLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.
Andreas KoeberleInstitute of Pharmacy, Friedrich-Schiller-University, Jena, Germany.ORCID 0000-0001-6269-5088
Cristina González-EstévezLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.ORCID 0000-0002-4976-2538
Karl Lenhard RudolphLeibniz Institute on Aging - Fritz Lipmann Institute e.V., Jena, Germany.ORCID 0000-0002-4839-2862
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEUniversität Innsbruck · ATUniversität Ulm · DE

Funding

European Research Council 323136
6 · The paper itself

Abstract

Lipid metabolism influences stem cell maintenance and differentiation but genetic factors that control these processes remain to be delineated. Here, we identify Tnfaip2 as an inhibitor of reprogramming of mouse fibroblasts into induced pluripotent stem cells. Tnfaip2 knockout impairs differentiation of embryonic stem cells (ESCs), and knockdown of the planarian para-ortholog, Smed-exoc3, abrogates in vivo tissue homeostasis and regeneration-processes that are driven by somatic stem cells. When stimulated to differentiate, Tnfaip2-deficient ESCs fail to induce synthesis of cellular triacylglycerol (TAG) and lipid droplets (LD) coinciding with reduced expression of vimentin (Vim)-a known inducer of LD formation. Smed-exoc3 depletion also causes a strong reduction of TAGs in planarians. The study shows that Tnfaip2 acts epistatically with and upstream of Vim in impairing cellular reprogramming. Supplementing palmitic acid (PA) and palmitoyl-L-carnitine (the mobilized form of PA) restores the differentiation capacity of Tnfaip2-deficient ESCs and organ maintenance in Smed-exoc3-depleted planarians. Together, these results identify a novel role of Tnfaip2 and exoc3 in controlling lipid metabolism, which is essential for ESC differentiation and planarian organ maintenance.

Indexed as

Lipid MetabolismPlanariansAnimalsCell DifferentiationHomeostasisMiceRNA InterferenceExoc3lipid metabolismorgan homeostasisstem cell differentiationTnfaip2

Identifiers

PMID33300287
PMCPMC7788457
OpenAlexW3112689518

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.