Evidence map›Paper›PMID 33300245›Full record

ArticleHuman mutation2021

Specifications of the ACMG/AMP variant interpretation guidelines for germline TP53 variants.

Cristina Fortuno, Kristy Lee, Magali Olivier, Tina Pesaran, Phuong L Mai, Kelvin C de Andrade, Laura D Attardi, Stephanie Crowley, D Gareth Evans, Bing-Jian Feng and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed, 2 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 2 syntheses or guidelines pooled it, 162 citations in OpenAlex.

  1. SEOM clinical guideline on heritable TP53-related cancer syndrome (2022).Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
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63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 15 institutions in 4 countries.

Cristina FortunoQIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.
Kristy LeeDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Magali OlivierInternational Agency for Research on Cancer, Lyon, France.
Tina PesaranAmbry Genetics, Aliso Viejo, California, USA.
Phuong L MaiMagee-Womens Hospital, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Kelvin C de AndradeClinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.ORCID 0000-0003-4651-996X
Laura D AttardiDepartments of Radiation-Oncology and Genetics, Stanford University, Stanford, California, USA.
Stephanie CrowleyDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
D Gareth EvansUniversity of Manchester, Manchester, UK.
Bing-Jian FengUniversity of Utah, Salt Lake City, Utah, USA.
Ann K M ForemanDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Megan N FroneClinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.
Robert HuetherTempus, Chicago, Illinois, USA.
Paul A JamesSir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Australia.ORCID 0000-0002-4361-4657
Kelly McGoldrickAmbry Genetics, Aliso Viejo, California, USA.
Jessica MesterGeneDx, Gaithersburg, Maryland, USA.ORCID 0000-0001-9374-3185
Bryce A SeifertDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.ORCID 0000-0001-7970-3611
Thomas P SlavinCity of Hope, Duarte, California, USA.
Leora WitkowskiLaboratory for Molecular Medicine, Partners Healthcare Personalized Medicine, Cambridge, Maryland, USA.
Liying ZhangMemorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID 0000-0003-4517-0751
Sharon E PlonDepartment of Pediatrics/Hematology-Oncology, Baylor College of Medicine, Houston, Texas, USA.
Amanda B SpurdleQIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.ORCID 0000-0003-1337-7897
Sharon A SavageClinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.ORCID 0000-0001-6006-0740
ClinGen TP53 Variant Curation Expert Panel
University of North Carolina at Chapel Hill · USNational Cancer Institute · USAmbry Genetics (United States) · USQIMR Berghofer Medical Research Institute · AUBaylor College of Medicine · USCentre international de recherche sur le cancer · FRCity of Hope · USMagee-Womens Hospital · USMass General Brigham · USMemorial Sloan Kettering Cancer Center · USStanford University · USTempus Labs (United States) · USThe University of Melbourne · AUUniversity of Manchester · GBUniversity of Utah · US

Funding

Clinical Genetic Studies of Familial and Hereditary Cancer SyndromesZIACP010144 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI SAVAGE, SHARON A. · 2009 to 2025
$111.8M
The Clinical Genome Resource – Advancing genomic medicine through biocuration and expert assessment of genes and variants at scaleU24HG009650 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JONATHAN S BERG, Jessica Ezzell Hunter · 2021 to 2026
$30.0M
Resource ProjectU41HG006834 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI MARTIN, CHRISTA LESE, REHM, HEIDI L · 2013 to 2020
$26.9M
The Future of PharmGKB Funding Under NHGRIU41HG009649 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL · 2017 to 2020
$13.4M
The Clinical Genome Resource - Expert Curation and EHR IntegrationU41HG009650 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERG, JONATHAN S · 2017 to 2020
$13.3M
Clinically Relevant Genome Variation DatabaseU01HG007436 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, PLON, SHARON E. · 2013 to 2016
$10.5M
A Knowledge Base for Clinically Relevant Genes and VariantsU01HG007437 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERG, JONATHAN S, EVANS, JAMES PHILIP · 2013 to 2016
$9.0M
Precision approaches to refining TP53-associated cancer riskR01CA242218 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI AMOS, CHRISTOPHER I., GARBER, JUDY E. · 2019 to 2023
$8.5M
Mentored Clinical Scientist Research Career Development Award (Parent K08)K08CA234394 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI SLAVIN, THOMAS PAUL · 2018 to 2019
$498k
CLONING OF A YEAST GENE REQUIRED FOR DNA EXCISION REPAIRF32CA007437 · NCI · STANFORD UNIVERSITY · PI ROBINSON, GORDON W · 1985 to 1985
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CCR NIH HHS HHSN261200800001CIntramural NIH HHS ZIA CP010144NCI NIH HHS HHSN261200800001ENCI NIH HHS K08 CA234394NCI NIH HHS R01 CA242218NHGRI NIH HHS U01 HG007436NHGRI NIH HHS U01 HG007437NHGRI NIH HHS U24 HG009650NHGRI NIH HHS U41 HG006834NHGRI NIH HHS U41 HG009649NHGRI NIH HHS U41 HG009650World Health Organization 001
6 · The paper itself

Abstract

Germline pathogenic variants in TP53 are associated with Li-Fraumeni syndrome, a cancer predisposition disorder inherited in an autosomal dominant pattern associated with a high risk of malignancy, including early-onset breast cancers, sarcomas, adrenocortical carcinomas, and brain tumors. Intense cancer surveillance for individuals with TP53 germline pathogenic variants is associated with reduced cancer-related mortality. Accurate and consistent classification of germline variants across clinical and research laboratories is important to ensure appropriate cancer surveillance recommendations. Here, we describe the work performed by the Clinical Genome Resource TP53 Variant Curation Expert Panel (ClinGen TP53 VCEP) focused on specifying the American College of Medical Genetics and Genomics and the Association for Molecular Pathology (ACMG/AMP) guidelines for germline variant classification to the TP53 gene. Specifications were developed for 20 ACMG/AMP criteria, while nine were deemed not applicable. The original strength level for the 10 criteria was also adjusted due to current evidence. Use of TP53-specific guidelines and sharing of clinical data among experts and clinical laboratories led to a decrease in variants of uncertain significance from 28% to 12% compared with the original guidelines. The ClinGen TP53 VCEP recommends the use of these TP53-specific ACMG/AMP guidelines as the standard strategy for TP53 germline variant classification.

Indexed as

Genetic VariationLi-Fraumeni SyndromeTumor Suppressor Protein p53Genetic TestingGerm CellsHumansUnited StatesTP53 protein, humanTumor Suppressor Protein p53cancerpathogenic variantTP53variant curation

Identifiers

PMID33300245
PMCPMC8374922
OpenAlexW3111162271

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.