Evidence map›Paper›PMID 33298948›Full record

ArticleNPJ genomic medicine2020

Missense variant contribution to USP9X-female syndrome.

Lachlan A Jolly, Euan Parnell, Alison E Gardner, Mark A Corbett, Luis A Pérez-Jurado, Marie Shaw, Gaetan Lesca, Catherine Keegan, Michael C Schneider, Emily Griffin and 23 more

Open access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Biallelic USP14 variants cause a syndromic neurodevelopmental disorder.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Novel Variant in theMolecular syndromology · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 20 institutions in 9 countries.

Lachlan A JollyUniversity of Adelaide and Robinson Research Institute, Adelaide, SA, 5005, Australia. Lachlan.Jolly@adelaide.edu.au.ORCID http://orcid.org/0000-0003-4538-2658
Euan ParnellDepartment of Physiology, Northwestern University Feinberg School of Medicine, Chicago, Il, USA.ORCID http://orcid.org/0000-0002-2590-2786
Alison E GardnerUniversity of Adelaide and Robinson Research Institute, Adelaide, SA, 5005, Australia.
Mark A CorbettUniversity of Adelaide and Robinson Research Institute, Adelaide, SA, 5005, Australia.ORCID http://orcid.org/0000-0001-9298-3072
Luis A Pérez-JuradoUniversity of Adelaide and Robinson Research Institute, Adelaide, SA, 5005, Australia.ORCID http://orcid.org/0000-0002-1988-3005
Marie ShawUniversity of Adelaide and Robinson Research Institute, Adelaide, SA, 5005, Australia.
Gaetan LescaInstitut Neuromyogène, métabolisme énergétique et développement durable, CNRS UMR 5310, INSERM U1217, Université de Lyon, Université Claude Bernard Lyon 1, Lyon, France.
Catherine KeeganDivision of Genetics, Department of Pediatrics, University of Michigan, Ann Arbor, MI, USA.
Michael C SchneiderSection of Neurology, Department of Pediatrics, St. Christopher's Hospital for Children, Drexel University College of Medicine, Philadelphia, PA, USA.
Emily GriffinDivision of Clinical Genetics, Department of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
Felicitas MaierDr. von Hauner Children's Hospital, LMU - Ludwig-Maximilians-Universität Munich, University of Munich Medical Center, Munich, Germany.
Courtney KissKingston Health Sciences Centre, Kingston, ON, K7L 2V7, Canada.
Andrea GuerinDivision of Medical Genetics, Department of Pediatrics, Kingston General Hospital, Kingston, ON, Canada.
Kathleen CrosbyDivision of Genetics and Metabolism, Children's National Hospital, Washington, DC, USA.
Kenneth RosenbaumDivision of Genetics and Metabolism, Children's National Hospital, Washington, DC, USA.
Pranoot TanpaiboonDivision of Genetics and Metabolism, Children's National Hospital, Washington, DC, USA.
Sandra WhalenUnité Fonctionnelle de génétique clinique, Hôpital Armand Trousseau, Assistance publique-Hôpitaux de Paris, Centre de Référence Maladies Rares des anomalies du développement et syndromes malformatifs, Paris, France.
Boris KerenHôpital de la Pitié-Salpêtrière, Département de Génétique, Paris, France.
Julie McCarrierDivision of Genetics, Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.
Donald BaselDivision of Genetics, Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.
Simon SadedinVictorian Clinical Genetics Service, Melbourne, VIC, Australia.
Susan M WhiteVictorian Clinical Genetics Service, Melbourne, VIC, Australia.
Martin B DelatyckiVictorian Clinical Genetics Service, Melbourne, VIC, Australia.
Tjitske KleefstraDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, 6500, HB, the Netherlands.
Sébastien KüryService de Génétique Médicale, CHU Nantes, 44093, Nantes, France.ORCID http://orcid.org/0000-0001-5497-0465
Alfredo BruscoDepartment of Medical Sciences, University of Turin, Torino, Italy.ORCID http://orcid.org/0000-0002-8318-7231
Elena Sukarova-AngelovskaDepartment of Endocronology and Genetics, University Clinic for Children's Diseases, Medical Faculty, University Sv. Kiril i Metodij, Skopje, Republic of Macedonia.
Slavica TrajkovaDepartment of Medical Sciences, University of Turin, Torino, Italy.
Sehoun YoonDepartment of Physiology, Northwestern University Feinberg School of Medicine, Chicago, Il, USA.
Stephen A WoodGriffith Institute for Drug Discovery, Griffith University, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-2576-7457
Michael PiperSchool of Biomedical Sciences, University of Queensland, Brisbane, QLD, 4072, Australia.
Peter PenzesDepartment of Physiology, Northwestern University Feinberg School of Medicine, Chicago, Il, USA.
Jozef GeczUniversity of Adelaide and Robinson Research Institute, Adelaide, SA, 5005, Australia. Jozef.Gecz@adelaide.edu.au.ORCID http://orcid.org/0000-0002-7884-6861
The University of Adelaide · AUChildren's National · USNorthwestern University · USThe University of Melbourne · AUMedical College of Wisconsin · USSorbonne Université · FRAzienda Ospedaliera Citta' della Salute e della Scienza di Torino · ITCentre National de la Recherche Scientifique · FRColumbia University Irving Medical Center · USGriffith University · AUKingston General Hospital · CAKingston Health Sciences Centre · CALudwig-Maximilians-Universität München · DERadboud University Nijmegen · NLSouth Australian Health and Medical Research Institute · AUSt. Christopher's Hospital for Children · USThe University of Queensland · AUUniversitat Pompeu Fabra · ESUniversité Claude Bernard Lyon 1 · FRUniversity Clinic of Traumatology · AT

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
Postsynaptic roles of ankyrinsR01MH107182 · NIMH · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Peter Penzes · 2015 to 2026
$5.6M
A powerful web-based discovery platform for rare disease geneticsR01HG009141 · NHGRI · BROAD INSTITUTE, INC. · PI QUINLAN, AARON R, REHM, HEIDI L · 2017 to 2020
$2.9M
1/4 - The Autism Sequencing Consortium: Autism Gene Discovery in >50,000 ExomesU01MH111661 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BUXBAUM, JOSEPH D. · 2017 to 2021
$2.6M
NHGRI NIH HHS R01 HG009141NHGRI NIH HHS UM1 HG008900NIMH NIH HHS R01 MH107182NIMH NIH HHS U01 MH111661
6 · The paper itself

Abstract

USP9X is an X-chromosome gene that escapes X-inactivation. Loss or compromised function of USP9X leads to neurodevelopmental disorders in males and females. While males are impacted primarily by hemizygous partial loss-of-function missense variants, in females de novo heterozygous complete loss-of-function mutations predominate, and give rise to the clinically recognisable USP9X-female syndrome. Here we provide evidence of the contribution of USP9X missense and small in-frame deletion variants in USP9X-female syndrome also. We scrutinise the pathogenicity of eleven such variants, ten of which were novel. Combined application of variant prediction algorithms, protein structure modelling, and assessment under clinically relevant guidelines universally support their pathogenicity. The core phenotype of this cohort overlapped with previous descriptions of USP9X-female syndrome, but exposed heightened variability. Aggregate phenotypic information of 35 currently known females with predicted pathogenic variation in USP9X reaffirms the clinically recognisable USP9X-female syndrome, and highlights major differences when compared to USP9X-male associated neurodevelopmental disorders.

Identifiers

PMID33298948
PMCPMC7725775
OpenAlexW3111855133

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.