Evidence map›Paper›PMID 33298522›Full record

ArticleThe Journal of biological chemistry

An "epitomic" analysis of the specificity of conformation-dependent, anti-Aß amyloid monoclonal antibodies.

Jorge Mauricio Reyes-Ruiz, Rie Nakajima, Ibtisam Baghallab, Luki Goldschmidt, Justyna Sosna, Phuong Nguyen Mai Ho, Taha Kumosani, Philip L Felgner, Charles Glabe

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Deconvolution in Alzheimer's disease.Neural regeneration research · 2026
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  8. Microglial INPP5D limits plaque formation and glial reactivity in the PSAPP mouse model of Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2023
    Article
  9. Article
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  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jorge Mauricio Reyes-RuizDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, California, USA.
Rie NakajimaDepartment of Physiology and Biophysics, Vaccine Research and Development Center, University of California Irvine, Irvine, California, USA.
Ibtisam BaghallabBiochemistry Department, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Luki GoldschmidtDepartment of Biochemistry, Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Justyna SosnaDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, California, USA.
Phuong Nguyen Mai HoDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, California, USA.
Taha KumosaniBiochemistry Department, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Philip L FelgnerDepartment of Physiology and Biophysics, Vaccine Research and Development Center, University of California Irvine, Irvine, California, USA.
Charles GlabeDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, California, USA. Electronic address: cglabe@uci.edu.
University of California, Irvine · USKing Abdulaziz University · SAUniversity of Washington · US

Funding

Conformational polymorphisms of amyloid in AD and immunological biomarkers and therapeuticsRF1AG056507 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI GLABE, CHARLES G. · 2018 to 2019
$3.6M
Endogenous human antibodies in aging and Alzheimer's disease and the immune response to amyloidRF1AG061857 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI GLABE, CHARLES G., WALSH, CRAIG MICHAEL · 2018 to 2018
$3.5M
Conformational polymorphisms of amyloid in AD and immunological biomarkers and therapeuticsR56AG056507 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI GLABE, CHARLES G. · 2017 to 2017
$699k
NIA NIH HHS R56 AG056507NIA NIH HHS RF1 AG056507NIA NIH HHS RF1 AG061857
6 · The paper itself

Abstract

Antibodies against Aß amyloid are indispensable research tools and potential therapeutics for Alzheimer's disease. They display several unusual properties, such as specificity for aggregated forms of the peptide, the ability to distinguish polymorphic aggregate structures, and the ability to recognize generic aggregation-related epitopes formed by unrelated amyloid sequences. Understanding the mechanisms underlying these unusual properties and the structures of their corresponding epitopes is crucial for the understanding why antibodies display different therapeutic activities and for the development of more effective therapeutic agents. Here we employed a novel "epitomic" approach to map the fine structure of the epitopes of 28 monoclonal antibodies against amyloid-beta using immunoselection of random sequences from a phage display library, deep sequencing, and pattern analysis to define the critical sequence elements recognized by the antibodies. Although most of the antibodies map to major linear epitopes in the amino terminal 1 to 14 residues of Aß, the antibodies display differences in the target sequence residues that are critical for binding and in their individual preferences for nontarget residues, indicating that the antibodies bind to alternative conformations of the sequence by different mechanisms. Epitomic analysis also identifies discontinuous, nonoverlapping sequence Aß segments that may constitute the conformational epitopes that underlie the aggregation specificity of antibodies. Aggregation-specific antibodies recognize sequences that display a significantly higher predicted propensity for forming amyloid than antibodies that recognize the monomer, indicating that the ability of random sequences to aggregate into amyloid is a critical element of their binding mechanism.

Indexed as

Alzheimer DiseaseAmino Acid SequenceAmyloid beta-PeptidesAntibodies, MonoclonalBinding SitesBrainEpitope MappingEpitopesHumansMicrotomyNeuronsPeptide FragmentsPeptide LibraryPlaque, AmyloidProtein AggregatesProtein Array AnalysisAmyloid beta-Peptidesamyloid beta-protein (1-42)Antibodies, MonoclonalEpitopesPeptide FragmentsPeptide LibraryProtein AggregatesAlzheimer’s diseaseamyloid antibodiesbioinformaticsdiscontinuous epitopesepitope mappingimmunotherapyphage display

Identifiers

PMID33298522
PMCPMC7949048
OpenAlexW3110724847

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.