Evidence map›Paper›PMID 33298460›Full record

ArticleDevelopment (Cambridge, England)2021

Extensive nuclear gyration and pervasive non-genic transcription during primordial germ cell development in zebrafish.

Stefan Redl, Antonio M de Jesus Domingues, Edoardo Caspani, Stefanie Möckel, Willi Salvenmoser, Maria Mendez-Lago, René F Ketting

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. A dual ribosomal system in the zebrafish soma and germline.bioRxiv : the preprint server for biology · 2024
    Article
  3. Article
  4. Sexual determination in zebrafish.Cellular and molecular life sciences : CMLS · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Stefan RedlBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Antonio M de Jesus DominguesBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.ORCID 0000-0002-1803-1863
Edoardo CaspaniBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.
Stefanie MöckelFlow Cytometry Core Facility, Institute of Molecular Biology (IMB), Ackermannweg 4, 55128 Mainz, Germany.
Willi SalvenmoserInstitute of Zoology, Evolution and Developmental Biology, University of Innsbruck, Technikerstraβe 25, 6020 Innsbruck, Austria.
Maria Mendez-LagoGenomics Core Facility, Institute of Molecular Biology (IMB), Ackermannweg 4, 55128 Mainz, Germany.
René F KettingBiology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany r.ketting@imb.de.ORCID 0000-0001-6161-5621
Institute of Molecular Biology · DEJohannes Gutenberg University Mainz · DEUniversität Innsbruck · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Primordial germ cells (PGCs) are the precursors of germ cells, which migrate to the genital ridge during early development. Relatively little is known about PGCs after their migration. We studied this post-migratory stage using microscopy and sequencing techniques, and found that many PGC-specific genes, including genes known to induce PGC fate in the mouse, are only activated several days after migration. At this same time point, PGC nuclei become extremely gyrated, displaying general broad opening of chromatin and high levels of intergenic transcription. This is accompanied by changes in nuage morphology, expression of large loci (PGC-expressed non-coding RNA loci, PERLs) that are enriched for retro-transposons and piRNAs, and a rise in piRNA biogenesis signatures. Interestingly, no nuclear Piwi protein could be detected at any time point, indicating that the zebrafish piRNA pathway is fully cytoplasmic. Our data show that the post-migratory stage of zebrafish PGCs holds many cues to both germ cell fate establishment and piRNA pathway activation.

Indexed as

Transcription, GeneticAnimalsCell NucleusDNA-Directed RNA PolymerasesDNA, IntergenicDNA Transposable ElementsFertilizationGene Expression Regulation, DevelopmentalGenetic LociGerm CellsMutationRNA, Small InterferingRNA, UntranslatedUp-RegulationZebrafishZebrafish ProteinsDNA-Directed RNA PolymerasesDNA, IntergenicDNA Transposable ElementsRNA, Small InterferingRNA, UntranslatedZebrafish ProteinsGyrationIntergenic transcriptionNuageNuclear morphologypiRNAPrimordial germ cellZebrafishZygotic activation

Identifiers

PMID33298460
PMCPMC7847270
OpenAlexW3111809549

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.