Evidence map›Paper›PMID 33291215›Full record

ReviewViruses2020

Advances in the Bioinformatics Knowledge of mRNA Polyadenylation in Baculovirus Genes.

Iván Gabriel Peros, Carolina Susana Cerrudo, Marcela Gabriela Pilloff, Mariano Nicolás Belaich, Mario Enrique Lozano, Pablo Daniel Ghiringhelli

Open access · goldAbstract readReview
In one paragraph

Review in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Iván Gabriel PerosLaboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Carolina Susana CerrudoLaboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.ORCID 0000-0003-1748-5385
Marcela Gabriela PilloffLaboratorio de Virus Emergentes, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Mariano Nicolás BelaichLaboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.ORCID 0000-0002-3346-4587
Mario Enrique LozanoLaboratorio de Virus Emergentes, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Pablo Daniel GhiringhelliLaboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.ORCID 0000-0002-2003-0106
National University of Quilmes · AR

Funding

DISEASE PREVENTION ANALYSIS OF INTESTINAL METAPLASIAF06TW002008 · FIC · UNIVERSITY OF ARIZONA · PI AICKIN, MIKEL G · 1994 to 1994
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6 · The paper itself

Abstract

Baculoviruses are a group of insect viruses with large circular dsDNA genomes exploited in numerous biotechnological applications, such as the biological control of agricultural pests, the expression of recombinant proteins or the gene delivery of therapeutic sequences in mammals, among others. Their genomes encode between 80 and 200 proteins, of which 38 are shared by all reported species. Thanks to multi-omic studies, there is remarkable information about the baculoviral proteome and the temporality in the virus gene expression. This allows some functional elements of the genome to be very well described, such as promoters and open reading frames. However, less information is available about the transcription termination signals and, consequently, there are still imprecisions about what are the limits of the transcriptional units present in the baculovirus genomes and how is the processing of the 3' end of viral mRNA. Regarding to this, in this review we provide an update about the characteristics of DNA signals involved in this process and we contribute to their correct prediction through an exhaustive analysis that involves bibliography information, data mining, RNA structure and a comprehensive study of the core gene 3' ends from 180 baculovirus genomes.

Indexed as

Gene Expression Regulation, ViralPolyadenylationTranscription, Genetic3' Untranslated RegionsAnimalsBaculoviridaeBinding SitesGenome, ViralGenomicsInsect VirusesProtein BindingRegulatory Sequences, Ribonucleic AcidRNA, MessengerRNA Processing, Post-TranscriptionalVirus Replication3' Untranslated RegionsRegulatory Sequences, Ribonucleic AcidRNA, MessengerBaculoviridaemRNApattern-searchingpolyadenylation processRNA structure

Identifiers

PMID33291215
PMCPMC7762203
OpenAlexW3112786295

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.