Evidence map›Paper›PMID 33290746›Full record

ArticleMolecular cell2020

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid.

Christiane Iserman, Christine A Roden, Mark A Boerneke, Rachel S G Sealfon, Grace A McLaughlin, Irwin Jungreis, Ethan J Fritch, Yixuan J Hou, Joanne Ekena, Chase A Weidmann and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 236 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
236citing papers in PubMed, 1 pooled it
19.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

236 citing papers in PubMed, 1 synthesis or guideline pooled it, 358 citations in OpenAlex.

  1. Pooled it
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  3. Article
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  5. G-Quadruplexes: Structural Diversity and Emerging Roles in Biomolecular Condensation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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176 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Christiane IsermanDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Christine A RodenDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Mark A BoernekeDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Rachel S G SealfonCenter for Computational Biology, Flatiron Institute, New York, NY, USA.
Grace A McLaughlinDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Irwin JungreisMIT Computer Science and Artificial Intelligence Laboratory, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Ethan J FritchDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Yixuan J HouDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Joanne EkenaDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Chase A WeidmannDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Chandra L TheesfeldLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Manolis KellisMIT Computer Science and Artificial Intelligence Laboratory, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Olga G TroyanskayaCenter for Computational Biology, Flatiron Institute, New York, NY, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Ralph S BaricDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Timothy P SheahanDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Kevin M WeeksDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Amy S GladfelterDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. Electronic address: amyglad@unc.edu.
University of North Carolina at Chapel Hill · USBroad Institute · USPrinceton University · USFlatiron Health (United States) · US

Funding

Project 4 - Influenza - UABU19AI142759 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WHITLEY, RICHARD J. · 2019 to 2023
$37.5M
Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
Pilot Study: POPULATION PHARMACOLOGYU54HL117798 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2012 to 2016
$18.5M
Non-coding RNA structure change in Chronic Obstructive Pulmonary DiseaseR01HL111527 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Alain T Laederach, Kevin M Weeks · 2012 to 2026
$6.6M
lntegration and Visualization of Diverse Biological DataR01GM071966 · NIGMS · PRINCETON UNIVERSITY · PI TROYANSKAYA, OLGA G · 2005 to 2022
$6.4M
Discovery and Function of Higher-Order RNA StructureR35GM122532 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Kevin M Weeks · 2017 to 2026
$5.7M
Cytoplasmic Organization by phase transitionsR01GM081506 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GLADFELTER, AMY S · 2010 to 2023
$4.0M
Context-Sensitive Search of Human Expression CompendiaR01HG005998 · NHGRI · PRINCETON UNIVERSITY · PI TROYANSKAYA, OLGA G · 2011 to 2013
$1.1M
RNA structures critical for dictating the contents, behavior, and function of droplets formed from liquid-liquid phase separationF32GM136164 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RODEN, CHRISTINE ANNE · 2020 to 2022
$157k
The role of higher order RNA structure in RNA virus replication and infectionF32GM128330 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOERNEKE, MARK A · 2018 to 2019
$120k
NCI NIH HHS T32 CA009156NHGRI NIH HHS R01 HG005998NHLBI NIH HHS R01 HL111527NHLBI NIH HHS U54 HL117798NIAID NIH HHS HHSN272201000054CNIAID NIH HHS U19 AI142759NIGMS NIH HHS F32 GM128330NIGMS NIH HHS F32 GM136164NIGMS NIH HHS R01 GM071966NIGMS NIH HHS R01 GM081506NIGMS NIH HHS R35 GM122532
6 · The paper itself

Abstract

We report that the SARS-CoV-2 nucleocapsid protein (N-protein) undergoes liquid-liquid phase separation (LLPS) with viral RNA. N-protein condenses with specific RNA genomic elements under physiological buffer conditions and condensation is enhanced at human body temperatures (33°C and 37°C) and reduced at room temperature (22°C). RNA sequence and structure in specific genomic regions regulate N-protein condensation while other genomic regions promote condensate dissolution, potentially preventing aggregation of the large genome. At low concentrations, N-protein preferentially crosslinks to specific regions characterized by single-stranded RNA flanked by structured elements and these features specify the location, number, and strength of N-protein binding sites (valency). Liquid-like N-protein condensates form in mammalian cells in a concentration-dependent manner and can be altered by small molecules. Condensation of N-protein is RNA sequence and structure specific, sensitive to human body temperature, and manipulatable with small molecules, and therefore presents a screenable process for identifying antiviral compounds effective against SARS-CoV-2.

Indexed as

Genome, ViralAnimalsAntiviral AgentsChlorocebus aethiopsCoronavirus Nucleocapsid ProteinsCOVID-19COVID-19 Drug TreatmentDrug Evaluation, PreclinicalHEK293 CellsHumansNucleocapsidPhosphoproteinsRNA, ViralSARS-CoV-2Vero CellsAntiviral AgentsCoronavirus Nucleocapsid Proteinsnucleocapsid phosphoprotein, SARS-CoV-2PhosphoproteinsRNA, ViralSARS-CoV-2, Condensation, phase separation, packaging, RNP-MaP, RNA structure, nucleocapsid, coronavirus

Identifiers

PMID33290746
PMCPMC7691212
OpenAlexW3091406140

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.