Evidence map›Paper›PMID 33289792›Full record

ArticleFEMS microbiology reviews2021

The PEP-pyruvate-oxaloacetate node: variation at the heart of metabolism.

Jeroen G Koendjbiharie, Richard van Kranenburg, Servé W M Kengen

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology reviews, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 67 citations in OpenAlex.

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  17. Mycology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jeroen G KoendjbiharieLaboratory of Microbiology, Wageningen University, Stippeneng4, 6708 WE Wageningen, The Netherlands.ORCID 0000-0001-9047-8507
Richard van KranenburgLaboratory of Microbiology, Wageningen University, Stippeneng4, 6708 WE Wageningen, The Netherlands.ORCID 0000-0001-5856-1546
Servé W M KengenLaboratory of Microbiology, Wageningen University, Stippeneng4, 6708 WE Wageningen, The Netherlands.ORCID 0000-0001-6139-8946
Wageningen University & Research · NLCorbion (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

At the junction between the glycolysis and the tricarboxylic acid cycle-as well as various other metabolic pathways-lies the phosphoenolpyruvate (PEP)-pyruvate-oxaloacetate node (PPO-node). These three metabolites form the core of a network involving at least eleven different types of enzymes, each with numerous subtypes. Obviously, no single organism maintains each of these eleven enzymes; instead, different organisms possess different subsets in their PPO-node, which results in a remarkable degree of variation, despite connecting such deeply conserved metabolic pathways as the glycolysis and the tricarboxylic acid cycle. The PPO-node enzymes play a crucial role in cellular energetics, with most of them involved in (de)phosphorylation of nucleotide phosphates, while those responsible for malate conversion are important redox enzymes. Variations in PPO-node therefore reflect the different energetic niches that organisms can occupy. In this review, we give an overview of the biochemistry of these eleven PPO-node enzymes. We attempt to highlight the variation that exists, both in PPO-node compositions, as well as in the roles that the enzymes can have within those different settings, through various recent discoveries in both bacteria and archaea that reveal deviations from canonical functions.

Indexed as

Energy MetabolismArchaeaBacteriaEnzymesOxaloacetic AcidPhosphoenolpyruvatePyruvic AcidEnzymesOxaloacetic AcidPhosphoenolpyruvatePyruvic Acidcentral metabolismenzyme biochemistryoxaloacetatephosphoenolpyruvatePPO-nodepyruvate

Identifiers

PMID33289792
PMCPMC8100219
OpenAlexW3111307620

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.