Evidence map›Paper›PMID 33289590›Full record

ArticleEpigenetics2021

Methylomic Signatures of High Grade Serous Ovarian Cancer.

Horacio Cardenas, Fang Fang, Guanglong Jiang, Susan M Perkins, Chi Zhang, Robert E Emerson, George Hutchins, Harold N Keer, Yunlong Liu, Daniela Matei and 1 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01696032 (A Randomized, Controlled, Open-Label, Phase 2 Trial of SGI-110 and Carboplatin in Subjects With Platinum-Resistant Recurrent Ovarian Cancer), which is not on this map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01696032 phase2completednot on this map

A Randomized, Controlled, Open-Label, Phase 2 Trial of SGI-110 and Carboplatin in Subjects With Platinum-Resistant Recurrent Ovarian Cancer

TypeinterventionalSponsorAstex Pharmaceuticals, Inc.Ran2012 to 2016Enrolled120ConditionsOvarian CancerArmsSGI-110, Treatment of Choice (topotecan, pegylated liposomal doxorubicin, paclitaxel, or gemcitabine), Carboplatin
3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Epigenetic editing ofEpigenetics · 2024
    Article
  5. Review
  6. Preclinical Evaluation of NTX-301, a Novel DNA Hypomethylating Agent in Ovarian Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  7. Article
  8. Review
  9. Overview of Tumor Heterogeneity in High-Grade Serous Ovarian Cancers.International journal of molecular sciences · 2023
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Horacio CardenasDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Fang FangMedical Sciences Program, Indiana University School of Medicine, Bloomington, IN, USA.
Guanglong JiangCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA.
Susan M PerkinsDepartment of Biostatistics, Indiana University, Indianapolis, IN, USA.
Chi ZhangCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA.
Robert E EmersonDepartment of Pathology, Indiana University School of Medicine, Indianapolis, IN, USA.
George HutchinsDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Harold N KeerAstex Pharmaceuticals, Inc., Pleasanton, CA, USA.ORCID 0000-0003-0753-4921
Yunlong LiuCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA.
Daniela MateiDepartment of Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID 0000-0003-2169-5035
Kenneth NephewMedical Sciences Program, Indiana University School of Medicine, Bloomington, IN, USA.
Indiana University School of MedicineNorthwestern University · USAstex PharmaceuticalsIndiana University Bloomington · USIndiana University Health · USIndiana University – Purdue University Indianapolis · US

Funding

An Epigenetic Strategy for Restoring Carboplatin Sensitivity in Ovarian CancerR01CA182832 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MATEI, DANIELA E, NEPHEW, KENNETH P · 2014 to 2018
$1.6M
NCI NIH HHS R01 CA182832
6 · The paper itself

Abstract

High-grade serous ovarian cancer (HGSOC) harbours aberrant epigenetic features, including DNA methylation. In this study we delineate pathways and networks altered by DNA methylation and associated with HGSOC initiation and progression to a platinum-resistant state. By including tumours from patients who had been treated with the hypomethylating agent (HMA) guadecitabine, we also addressed the role of HMAs in treatment of HGSOC. Tumours from patients with primary (platinum-naïve) HGSOC (n = 20) were compared to patients with recurrent platinum-resistant HGSOC and enrolled in a recently completed clinical trial (NCT01696032). Human ovarian surface epithelial cells (HOSE; n = 5 samples) served as normal controls. Genome-wide methylation profiles were determined. DNA methyltransferase (DNMT) expression levels were examined by immunohistochemistry and correlated with clinical outcomes. Cancer-related and tumorigenesis networks were enriched among differentially methylated genes (DMGs) in primary OC vs. HOSE. When comparing platinum-resistant and primary tumours, 452 CpG island (CGI)-containing gene promoters acquired DNA methylation; of those loci, decreased (P < 0.01) methylation after HMA treatment was observed in 42% (n = 189 CGI). Stem cell pluripotency and cytokine networks were enriched in recurrent platinum-resistant OC tumours, while drug metabolism and transport-related networks were downregulated in tumours from HMA-treated patients compared to HOSE. Lower DNMT1 and 3B protein levels in pre-treatment tumours were associated with improved progression-free survival. The findings provide important insight into the DNA methylation landscape of HGSOC tumorigenesis, platinum resistance and epigenetic resensitization. Epigenetic reprogramming plays an important role in HGSOC aetiology and contributes to clinical outcomes.

Indexed as

Cystadenocarcinoma, SerousOvarian NeoplasmsCpG IslandsDNA MethylationDrug Resistance, NeoplasmHumansNeoplasm Recurrence, LocalepigeneticsmethylationOvarian cancerplatinumresistance

Identifiers

PMID33289590
PMCPMC8813084
OpenAlexW3112801978

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.