Evidence map›Paper›PMID 33289385›Full record

ArticleJournal of proteome research2021

Selective Labeling and Identification of the Tumor Cell Proteome of Pancreatic Cancer

Nancy G Azizian, Delaney K Sullivan, Litong Nie, Sammy Pardo, Dana Molleur, Junjie Chen, Susan T Weintraub, Yulin Li

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Nancy G AzizianCenter for Immunotherapy Research, Houston Methodist Research Institute, Houston, Texas 77030, United States.
Delaney K SullivanUCLA-Caltech Medical Scientist Training Program, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California 90095, United States.ORCID 0000-0002-8359-6705
Litong NieDepartment of Experimental Radiation Oncology, Division of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.
Sammy PardoDepartment of Biochemistry and Structural Biology, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, United States.
Dana MolleurDepartment of Biochemistry and Structural Biology, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, United States.
Junjie ChenDepartment of Experimental Radiation Oncology, Division of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, United States.ORCID 0000-0002-1493-2189
Susan T WeintraubDepartment of Biochemistry and Structural Biology, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, United States.ORCID 0000-0002-8328-7814
Yulin LiCenter for Immunotherapy Research, Houston Methodist Research Institute, Houston, Texas 77030, United States.ORCID 0000-0003-3479-9909
The University of Texas Health Science Center at San Antonio · USHouston Methodist · USThe University of Texas MD Anderson Cancer Center · USCalifornia Institute of Technology · US

Funding

UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
The Role of Suv420h1 Histone Methyltransferase in MYC-Driven TumorigenesisK22CA207598 · NCI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI LI, YULIN · 2017 to 2019
$565k
NCI NIH HHS K22 CA207598NIGMS NIH HHS T32 GM008042
6 · The paper itself

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is among the deadliest cancers. Dissecting the tumor cell proteome from that of the non-tumor cells in the PDAC tumor bulk is critical for tumorigenesis studies, biomarker discovery, and development of therapeutics. However, investigating the tumor cell proteome has proven evasive due to the tumor's extremely complex cellular composition. To circumvent this technical barrier, we have combined bioorthogonal noncanonical amino acid tagging (BONCAT) and data-independent acquisition mass spectrometry (DIA-MS) in an orthotopic PDAC model to specifically identify the tumor cell proteome

Indexed as

Amino Acyl-tRNA SynthetasesCarcinoma, Pancreatic DuctalPancreatic NeoplasmsAmino AcidsAzidesHumansProteomeTumor MicroenvironmentAmino AcidsAmino Acyl-tRNA SynthetasesAzidesProteomeazidonorleucine (ANL)bioorthogonal noncanonical amino acid tagging (BONCAT)data-independent acquisition mass spectrometry (DIA-MS)methionyl-tRNA synthetase (MetRS)pancreatic ductal adenocarcinoma (PDAC)patient-derived xenografts (PDX)

Identifiers

PMID33289385
PMCPMC8718109
OpenAlexW3110942242

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.