Evidence map›Paper›PMID 33289306›Full record

ArticleChemMedChem2021

Design and Synthesis of DDR1 Inhibitors with a Desired Pharmacophore Using Deep Generative Models.

Atsushi Yoshimori, Yasunobu Asawa, Enzo Kawasaki, Tomohiko Tasaka, Seiji Matsuda, Toru Sekikawa, Satoshi Tanabe, Masahiro Neya, Hideaki Natsugari, Chisato Kanai

Open access · hybridAbstract read
In one paragraph

Article in ChemMedChem, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Review
  3. Generative Deep Learning for de Novo Drug Design─A Chemical Space Odyssey.Journal of chemical information and modeling · 2025
    Review
  4. Review
  5. Review
  6. Virtual screening: hope, hype, and the fine line in between.Expert opinion on drug discovery · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Atsushi YoshimoriInstitute for Theoretical Medicine, Inc., 26-1, Muraoka-Higashi 2-chome, Fujisawa, Kanagawa, 251-0012, Japan.ORCID 0000-0003-3206-5143
Yasunobu AsawaInstitute for Theoretical Medicine, Inc., 26-1, Muraoka-Higashi 2-chome, Fujisawa, Kanagawa, 251-0012, Japan.
Enzo KawasakiINTAGE Healthcare, Inc., 79, Kankoboko-cho, Shimogyo-ku, Kyoto, 600-8009, Japan.
Tomohiko TasakaAffinity Science Corporation Aios Gotanda-ekimae, 1-11-1 Nishi-Gotanda, Shinagawa, Tokyo, 141-0031, Japan.
Seiji MatsudaKNC Laboratories Co., Ltd., 7-1-19, Minatojimaminamimachi, Chuo-ku, Kobe, Hyogo, 650-0047, Japan.
Toru SekikawaKNC Laboratories Co., Ltd., 7-1-19, Minatojimaminamimachi, Chuo-ku, Kobe, Hyogo, 650-0047, Japan.
Satoshi TanabeKNC Laboratories Co., Ltd., 7-1-19, Minatojimaminamimachi, Chuo-ku, Kobe, Hyogo, 650-0047, Japan.
Masahiro NeyaKNC Laboratories Co., Ltd., 7-1-19, Minatojimaminamimachi, Chuo-ku, Kobe, Hyogo, 650-0047, Japan.
Hideaki NatsugariAffinity Science Corporation Aios Gotanda-ekimae, 1-11-1 Nishi-Gotanda, Shinagawa, Tokyo, 141-0031, Japan.
Chisato KanaiINTAGE Healthcare, Inc., 79, Kankoboko-cho, Shimogyo-ku, Kyoto, 600-8009, Japan.
KAN Research Institute · JPInstituto de Física Teórica · ESKyoto Research Park · JPNikon (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Discoidin domain receptor 1 (DDR1) inhibitors with a desired pharmacophore were designed using deep generative models (DGMs). DDR1 is a receptor tyrosine kinase activated by matrix collagens and implicated in diseases such as cancer, fibrosis and hypoxia. Herein we describe the synthesis and inhibitory activity of compounds generated from DGMs. Three compounds were found to have sub-micromolar inhibitory activity. The most potent of which, compound 3 (N-(4-chloro-3-((pyridin-3-yloxy)methyl)phenyl)-3-(trifluoromethyl)benzamide), had an IC

Indexed as

Drug DesignBenzamidesDiscoidin Domain Receptor 1Dose-Response Relationship, DrugHumansModels, MolecularMolecular StructureProtein Kinase InhibitorsStructure-Activity RelationshipbenzamideBenzamidesDDR1 protein, humanDiscoidin Domain Receptor 1Protein Kinase InhibitorsDDR1deep generative modelde novo designpharmacophore model

Identifiers

PMID33289306
PMCPMC8048584
OpenAlexW3108822599

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.