Evidence map›Paper›PMID 33288916›Full record

ArticleNature human behaviour2021

A hitchhiker's guide to working with large, open-source neuroimaging datasets.

Corey Horien, Stephanie Noble, Abigail S Greene, Kangjoo Lee, Daniel S Barron, Siyuan Gao, David O'Connor, Mehraveh Salehi, Javid Dadashkarimi, Xilin Shen and 3 more

Abstract read
In one paragraph

Article in Nature human behaviour, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Principles of intensive human neuroimaging.Trends in neurosciences · 2024
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Human brain state dynamics reflect individual neuro-phenotypes.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Corey HorienInterdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT, USA. corey.horien@yale.edu.ORCID http://orcid.org/0000-0001-6738-1029
Stephanie NobleDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT, USA.
Abigail S GreeneInterdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-6011-7903
Kangjoo LeeDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7760-8079
Daniel S BarronDepartment of Psychiatry, Yale School of Medicine, New Haven, CT, USA.
Siyuan GaoDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-8925-7042
David O'ConnorDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-8885-518X
Mehraveh SalehiDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA.
Javid DadashkarimiDeparment of Computer Science, Yale University, New Haven, CT, USA.
Xilin ShenDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT, USA.
Evelyn M R LakeDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT, USA.
R Todd ConstableInterdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-5661-9521
Dustin ScheinostInterdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT, USA. dustin.scheinost@yale.edu.ORCID http://orcid.org/0000-0002-6301-1167

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Statistical Analysis CoreP50MH115716 · NIMH · YALE UNIVERSITY · PI VOLKMAR, FRED ROBERT · 2017 to 2021
$11.5M
NRSA Training CoreTL1TR001864 · NCATS · YALE UNIVERSITY · PI CANTLEY, LLOYD G, EDELMAN, E. JENNIFER · 2016 to 2025
$9.9M
Clinical Neuroscience Research Training Program in PsychiatryT32MH019961 · NIMH · YALE UNIVERSITY · PI Christopher John Pittenger · 1996 to 2026
$5.9M
Understanding evoked and resting-state fMRI through multi scale imagingR01MH111424 · NIMH · YALE UNIVERSITY · PI CONSTABLE, R TODD, CRAIR, MICHAEL C. · 2016 to 2020
$5.2M
Schizophrenia Research FellowshipR25MH071584 · NIMH · YALE UNIVERSITY · PI Christopher John Pittenger · 2005 to 2026
$4.4M
Multi-context software for robust and reproducible neuroscience image analysisR24MH114805 · NIMH · YALE UNIVERSITY · PI PAPADEMETRIS, XENOPHON, SCHEINOST, DUSTIN · 2017 to 2019
$1.2M
Constrained Network-Based Multiple Comparison CorrectionK00MH122372 · NIMH · YALE UNIVERSITY · PI NOBLE, STEPHANIE MARIE · 2019 to 2021
$242k
NCATS NIH HHS TL1 TR001864NCATS NIH HHS UL1 TR001863NIGMS NIH HHS T32 GM007205NIMH NIH HHS K00 MH122372NIMH NIH HHS P50 MH115716NIMH NIH HHS R01 MH111424NIMH NIH HHS R24 MH114805NIMH NIH HHS R25 MH071584NIMH NIH HHS T32 MH019961
6 · The paper itself

Abstract

Large datasets that enable researchers to perform investigations with unprecedented rigor are growing increasingly common in neuroimaging. Due to the simultaneous increasing popularity of open science, these state-of-the-art datasets are more accessible than ever to researchers around the world. While analysis of these samples has pushed the field forward, they pose a new set of challenges that might cause difficulties for novice users. Here we offer practical tips for working with large datasets from the end-user's perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results. This manuscript serves as a practical guide one can use when working with large neuroimaging datasets, thus dissolving barriers to scientific discovery.

Indexed as

Access to InformationDatasets as TopicNeuroimagingBiomedical ResearchHumans

Identifiers

PMID33288916
PMCPMC7992920

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.