Evidence map›Paper›PMID 33286869›Full record

ArticleEntropy (Basel, Switzerland)2020

A Multi-Scale Approach to Modeling

Eran Agmon, Ryan K Spangler

Open access · goldAbstract read
In one paragraph

Article in Entropy (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Matters of life and death in computational cell biology.NPJ systems biology and applications · 2026
    Review
  3. Article
  4. Article
  5. Integrative modeling of the cell.Acta biochimica et biophysica Sinica · 2022
    Review
  6. Article
  7. Bayesian metamodeling of complex biological systems across varying representations.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
  9. From integrative structural biology to cell biology.The Journal of biological chemistry
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Eran AgmonDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-1279-2474
Ryan K SpanglerDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-6080-3142
Stanford University · US

Funding

Adding an environment and motility in a Whole Cell Model of Escherichia ColiF32GM137464 · NIGMS · STANFORD UNIVERSITY · PI AGMON, ERAN · 2020 to 2021
$138k
NIH HHS F32GM137464
6 · The paper itself

Abstract

The degree to which we can understand the multi-scale organization of cellular life is tied to how well our models can represent this organization and the processes that drive its evolution. This paper uses Vivarium-an engine for composing heterogeneous computational biology models into integrated, multi-scale simulations. Vivarium's approach is demonstrated by combining several sub-models of biophysical processes into a model of chemotactic

Indexed as

chemotaxiscomputational systems biologyEscherichia colimodel integrationmulti-scale simulation

Identifiers

PMID33286869
PMCPMC7597207
OpenAlexW3091519537

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.