Evidence map›Paper›PMID 33285287›Full record

ArticleThe Journal of molecular diagnostics : JMD2021

A Pan-Cancer Study of Somatic TERT Promoter Mutations and Amplification in 30,773 Tumors Profiled by Clinical Genomic Sequencing.

Sounak Gupta, Chad M Vanderbilt, Yun-Te Lin, Jamal K Benhamida, Achim A Jungbluth, Satshil Rana, Amir Momeni-Boroujeni, Jason C Chang, Tiffany Mcfarlane, Paulo Salazar and 11 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 42 citations in OpenAlex.

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  5. Effect of co-occurring mutations inFrontiers in immunology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 1 institution in 1 country.

Sounak GuptaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Chad M VanderbiltDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Yun-Te LinDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Jamal K BenhamidaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Achim A JungbluthDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Satshil RanaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Amir Momeni-BoroujeniDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Jason C ChangDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Tiffany McfarlaneDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Paulo SalazarDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Kerry MullaneyDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Sumit MiddhaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Ahmet ZehirDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Anuradha GopalanDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Tejus A BaleDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Ian GanlyDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York.
Maria E ArcilaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Ryma BenayedDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Michael F BergerDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Marc LadanyiDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.
Snjezana DoganDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York. Electronic address: dogans@mskcc.org.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

TERT gene promoter mutations are known in multiple cancer types. Other TERT alterations remain poorly characterized. Sequencing data from 30,773 tumors analyzed by a hybridization capture next-generation sequencing assay (Memorial Sloan Kettering Cancer Center Integrated Mutation Profiling of Actionable Cancer Targets) were analyzed for the presence of TERT alterations. Promoter rearrangements (500 bases upstream of the transcriptional start site), hypermethylation (n = 57), and gene expression (n = 155) were evaluated for a subset of cases. Mutually exclusive and recurrent promoter mutations were identified at three hot spots upstream of the transcriptional start site in 11.3% of cases (-124: 74%; -146: 24%; and -138: <2%). Mutually exclusive amplification events were identified in another 2.3% of cases, whereas mutually exclusive rearrangements proximal to the TERT gene were seen in 24 cases. The highest incidence of TERT promoter mutations was seen in cutaneous melanoma (82%), whereas amplification events significantly outnumbered promoter mutations in well-differentiated/dedifferentiated liposarcoma (14.1% versus 2.4%) and adrenocortical carcinoma (13.6% versus 4.5%). Gene expression analysis suggests that the highest levels of gene expression are seen in cases with amplifications and rearrangements. Hypermethylation events upstream of the TERT coding sequence were not mutually exclusive with known pathogenic alterations. Studies aimed at defining the prevalence and prognostic impact of TERT alterations should incorporate other pathogenic TERT alterations as these may impact telomerase function.

Indexed as

GenomicsPromoter Regions, GeneticSequence Analysis, DNADNA MethylationGene Expression Regulation, NeoplasticGene RearrangementHumansMutationNeoplasmsTelomeraseTelomeraseTERT protein, human

Identifiers

PMID33285287
PMCPMC7874333
OpenAlexW3109748847

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.