Evidence map›Paper›PMID 33284814›Full record

ArticlePloS one2020

A proteomic analysis of peanut seed at different stages of underground development to understand the changes of seed proteins.

Haifen Li, Xuanqiang Liang, Baojin Zhou, Xiaoping Chen, Yanbin Hong, Ruo Zhou, Shaoxiong Li, Haiyan Liu, Qing Lu, Hao Liu and 1 more

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

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0cells of the map it votes in
6citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Proteomic Analysis ofPlants (Basel, Switzerland) · 2024
    Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Haifen LiState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China.
Xuanqiang LiangCrops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China.
Baojin ZhouTechnical Service Departments, Deepxomics Co., Ltd., Shenzhen, China.
Xiaoping ChenCrops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China.
Yanbin HongCrops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China.
Ruo ZhouTechnical Service Departments, Deepxomics Co., Ltd., Shenzhen, China.
Shaoxiong LiCrops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China.
Haiyan LiuCrops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China.
Qing LuCrops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China.
Hao LiuCrops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou, China.
Hong WuState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to obtain more valuable insights into the protein dynamics and accumulation of allergens in seeds during underground development, we performed a proteomic study on developing peanut seeds at seven different stages. A total of 264 proteins with altered abundance and contained at least one unique peptide was detected by matrix-assisted laser desorption ionization time-of-flight/time-of-flight mass spectrometry (MALDI-TOF/TOF MS). All identified proteins were classified into five functional categories as level 1 and 20 secondary functional categories as level 2. Among them, 88 identified proteins (IPs) were related to carbohydrate/ amino acid/ lipid transport and metabolism, indicating that carbohydrate/amino acid/ lipid metabolism played a key role in the underground development of peanut seeds. Hierarchical cluster analysis showed that all IPs could be classified into eight cluster groups according to the abundance profiles, suggesting that the modulatory patterns of these identified proteins were complicated during seed development. The largest group contained 41 IPs, the expression of which decreased at R 2 and reached a maximum at R3 but gradually decreased from R4. A total of 14 IPs were identified as allergen-like proteins by BLAST with A genome (Arachis duranensis) or B genome (Arachis ipaensis) translated allergen sequences. Abundance profile analysis of 14 identified allergens showed that the expression of all allergen proteins was low or undetectable by 2-DE at the early stages (R1 to R4), and began to accumulate from the R5 stage and gradually increased. Network analysis showed that most of the significant proteins were involved in active metabolic pathways in early development. Real time RT-PCR analysis revealed that transcriptional regulation was approximately consistent with expression at the protein level for 8 selected identified proteins. In addition, some amino acid sequences that may be associated with new allergens were also discussed.

Indexed as

AllergensArachisElectrophoresis, Gel, Two-DimensionalGene Expression Regulation, PlantProtein Interaction MapsProteomicsReal-Time Polymerase Chain ReactionRNA, PlantSeedsSeed Storage ProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAllergensRNA, PlantSeed Storage Proteins

Identifiers

PMID33284814
PMCPMC7721164

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.