Evidence map›Paper›PMID 33284793›Full record

ArticlePLoS genetics2020

CAF-1 and Rtt101p function within the replication-coupled chromatin assembly network to promote H4 K16ac, preventing ectopic silencing.

Tiffany J Young, Yi Cui, Claire Pfeffer, Emilie Hobbs, Wenjie Liu, Joseph Irudayaraj, Ann L Kirchmaier

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tiffany J YoungDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, United States of America.
Yi CuiPurdue University Center for Cancer Research, West Lafayette, Indiana, United States of America.ORCID 0000-0002-8597-0174
Claire PfefferDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0003-0045-2333
Emilie HobbsDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, United States of America.
Wenjie LiuDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0002-0011-5209
Joseph IrudayarajPurdue University Center for Cancer Research, West Lafayette, Indiana, United States of America.ORCID 0000-0002-0630-1520
Ann L KirchmaierDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0001-9938-9105
Purdue University West Lafayette · USUniversity of Illinois Urbana-Champaign · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI ANDREW D MESECAR · 1985 to 2026
$43.4M
NCI NIH HHS P30 CA023168
6 · The paper itself

Abstract

Replication-coupled chromatin assembly is achieved by a network of alternate pathways containing different chromatin assembly factors and histone-modifying enzymes that coordinate deposition of nucleosomes at the replication fork. Here we describe the organization of a CAF-1-dependent pathway in Saccharomyces cerevisiae that regulates acetylation of histone H4 K16. We demonstrate factors that function in this CAF-1-dependent pathway are important for preventing establishment of silenced states at inappropriate genomic sites using a crippled HMR locus as a model, while factors specific to other assembly pathways do not. This CAF-1-dependent pathway required the cullin Rtt101p, but was functionally distinct from an alternate pathway involving Rtt101p-dependent ubiquitination of histone H3 and the chromatin assembly factor Rtt106p. A major implication from this work is that cells have the inherent ability to create different chromatin modification patterns during DNA replication via differential processing and deposition of histones by distinct chromatin assembly pathways within the network.

Indexed as

Chromatin Assembly and DisassemblyEctopic Gene ExpressionGene SilencingCullin ProteinsDNA ReplicationHistonesRibonucleasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCullin ProteinsHistonesPOP2 protein, S cerevisiaeRibonucleasesRTT101 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID33284793
PMCPMC7746308
OpenAlexW3112374572

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.