ArticlePlant biotechnology journal2021
Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson.
Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 37 citations in OpenAlex.
- Near telomere-to-telomere genome assembly enables the discovery of introgressed purple-leaf geneHorticulture research · 2026Article
- Genomic analysis of 3,330 accessions provides insights into the evolutionary history and self-incompatibility locus of the Brassica A genome.Nature genetics · 2026Article
- Integrative machine learning and gene regulatory network analysis identifies novel genes for leafy head formation in Brassica rapa and B. oleracea.Molecular horticulture · 2026Article
- Integrative Analysis of DNA Methylome and Transcriptome Reveals the Mechanism of Heat Tolerance in Non-heading Chinese Cabbage.Journal of agricultural and food chemistry · 2026Article
- The wucai genome and DNA methylation regulation on the inner leaves' yellowing response to low temperature.Horticulture research · 2025Article
- Brassica Panache: A multi-species graph pangenome representing presence absence variation across forty-one Brassica genomes.The plant genome · 2025Article
- A chromosome-level reference genome facilitates the discovery of clubroot-resistant geneHorticulture research · 2025Article
- Genome Assembly and Structural Variation Analysis ofPlants (Basel, Switzerland) · 2024Article
- Variability of Glucosinolates in Pak Choy (Plants (Basel, Switzerland) · 2023Article
- The high-quality sequencing of theHorticulture research · 2023Article
- Integrated Transcriptome and Proteome Analysis Revealed the Regulatory Mechanism of Hypocotyl Elongation in Pakchoi.International journal of molecular sciences · 2023Article
- Characterization ofMolecular breeding : new strategies in plant improvement · 2023Article
- A High-Continuity Genome Assembly of Chinese Flowering Cabbage (Plants (Basel, Switzerland) · 2023Article
- A near-complete genome assembly of Brassica rapa provides new insights into the evolution of centromeres.Plant biotechnology journal · 2023Article
- Vegetable biology and breeding in the genomics era.Science China. Life sciences · 2023Review
- Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies.Plant communications · 2023Article
- SSR marker based analysis for identification and of genetic diversity of non-heading Chinese cabbage varieties.Frontiers in plant science · 2023Article
- Transposable element insertion: a hidden major source of domesticated phenotypic variation in Brassica rapa.Plant biotechnology journal · 2022Article
- Non-Heading Chinese Cabbage Database: An Open-Access Platform for the Genomics ofPlants (Basel, Switzerland) · 2022Article
- The highly continuous reference genome of a leaf-chimeric red pineapple (Ananas comosus var. bracteatus f. tricolor) provides insights into elaboration of leaf color.G3 (Bethesda, Md.) · 2022Article
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Authors and funding
10 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Brassica rapa displays a wide range of morphological diversity which is exploited for a variety of food crops. Here we present a high-quality genome assembly for pak choi (Brassica rapa L. subsp. chinensis), an important non-heading leafy vegetable, and comparison with the genomes of heading type Chinese cabbage and the oilseed form, yellow sarson. Gene presence-absence variation (PAV) and genomic structural variations (SV) were identified, together with single nucleotide polymorphisms (SNPs). The structure and expression of genes for leaf morphology and flowering were compared between the three morphotypes revealing candidate genes for these traits in B. rapa. The pak choi genome assembly and its comparison with other B. rapa genome assemblies provides a valuable resource for the genetic improvement of this important vegetable crop and as a model to understand the diversity of morphological variation across Brassica species.
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