Evidence map›Paper›PMID 33282511›Full record

ArticleBiomedical optics express2020

Multi-resolution open-top light-sheet microscopy to enable efficient 3D pathology workflows.

Lindsey A Barner, Adam K Glaser, Hongyi Huang, Lawrence D True, Jonathan T C Liu

Abstract read
In one paragraph

Article in Biomedical optics express, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Prototype-based AI triage for 3D pathology.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Mesoscopic Oblique Plane Microscopy via Light-sheet Mirroring.bioRxiv : the preprint server for biology · 2023
    Article
  15. An end-to-end workflow for non-destructive 3D pathology.bioRxiv : the preprint server for biology · 2023
    Article
  16. Article
  17. Article
  18. Review
  19. Digital Histopathology by Infrared Spectroscopic Imaging.Annual review of analytical chemistry (Palo Alto, Calif.) · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lindsey A BarnerDepartment of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA.
Adam K GlaserDepartment of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0003-3558-8994
Hongyi HuangDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, WA 98195, USA.
Lawrence D TrueDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, WA 98195, USA.
Jonathan T C LiuDepartment of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA.ORCID https://orcid.org/0000-0001-5650-3086

Funding

TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETER S NELSON · 2002 to 2026
$58.1M
In vivo dual-axis confocal microscopy of 5-ALA-induced PpIX to guide low-grade glioma resectionsR01CA244170 · NCI · UNIVERSITY OF WASHINGTON · PI LIU, JONATHAN T.C., SANAI, NADER · 2020 to 2024
$2.8M
Intraoperative confocal microscopy for quantitative delineation of low-grade glioR01CA175391 · NCI · UNIVERSITY OF WASHINGTON · PI LIU, JONATHAN T.C., SANAI, NADER · 2014 to 2018
$1.7M
Light-sheet micro-aspiration microscopy for the isolation and analysis of rare tumor cells from intact clinical specimensK99CA240681 · NCI · UNIVERSITY OF WASHINGTON · PI GLASER, ADAM K · 2019 to 2020
$316k
NCI NIH HHS K99 CA240681NCI NIH HHS P50 CA097186NCI NIH HHS R01 CA175391NCI NIH HHS R01 CA244170
6 · The paper itself

Abstract

Open-top light-sheet (OTLS) microscopes have been developed for user-friendly and versatile high-throughput 3D microscopy of thick specimens. As with all imaging modalities, spatial resolution trades off with imaging and analysis times. A hierarchical multi-scale imaging workflow would therefore be of value for many volumetric microscopy applications. We describe a compact multi-resolution OTLS microscope, enabled by a novel solid immersion meniscus lens (SIMlens), which allows users to rapidly transition between air-based objectives for low- and high-resolution 3D imaging. We demonstrate the utility of this system by showcasing an efficient 3D analysis workflow for a diagnostic pathology application.

Identifiers

PMID33282511
PMCPMC7687944

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.