Evidence map›Paper›PMID 33279577›Full record

ArticleJournal of molecular biology2021

DNA Polymerase ι Interacts with Both the TRAF-like and UBL1-2 Domains of USP7.

Nicholas W Ashton, Gabrielle J Valles, Nancy Jaiswal, Irina Bezsonova, Roger Woodgate

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Nicholas W AshtonLaboratory of Genomic Integrity, National Institute of Child Health and Human Development, National Institutes of Health, 9800 Medical Center Drive, Bethesda, MD 20892-3371, USA. Electronic address: nicholas.ashton@nih.gov.
Gabrielle J VallesDepartment of Molecular Biology and Biophysics, UConn Health, Farmington, CT 06030, USA. Electronic address: valles@uchc.edu.
Nancy JaiswalDepartment of Molecular Biology and Biophysics, UConn Health, Farmington, CT 06030, USA. Electronic address: njaiswal@uchc.edu.
Irina BezsonovaDepartment of Molecular Biology and Biophysics, UConn Health, Farmington, CT 06030, USA. Electronic address: bezsonova@uchc.edu.
Roger WoodgateLaboratory of Genomic Integrity, National Institute of Child Health and Human Development, National Institutes of Health, 9800 Medical Center Drive, Bethesda, MD 20892-3371, USA. Electronic address: woodgate@nih.gov.
UConn Health · USNational Institutes of Health · US

Funding

DNA Replication, Repair, and Mutagenesis In Eukaryotic And Prokaryotic CellsZIAHD001500 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI WOODGATE, ROGER · 2009 to 2025
$37.5M
TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
UBIQUITIN-PROTEASOME PATHWAY IN CANCERR35GM128864 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI BEZSONOVA, IRINA · 2018 to 2022
$1.6M
Development and Application of Non-Fourier Method for Biomolecular NMRR01GM123249 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2018 to 2021
$1.5M
NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R01 GM123249NIGMS NIH HHS R35 GM128864
6 · The paper itself

Abstract

Reversible protein ubiquitination is an essential signaling mechanism within eukaryotes. Deubiquitinating enzymes are critical to this process, as they mediate removal of ubiquitin from substrate proteins. Ubiquitin-specific protease 7 (USP7) is a prominent deubiquitinating enzyme, with an extensive network of interacting partners and established roles in cell cycle activation, immune responses and DNA replication. Characterized USP7 substrates primarily interact with one of two major binding sites outside the catalytic domain. These are located on the USP7 N-terminal TRAF-like (TRAF) domain and the first and second UBL domains (UBL1-2) within the C-terminal tail. Here, we report that DNA polymerase iota (Pol ι) is a novel USP7 substrate that interacts with both TRAF and UBL1-2. Through the use of biophysical approaches and mutational analysis, we characterize both interfaces and demonstrate that bipartite binding to both USP7 domains is required for efficient Pol ι deubiquitination. Together, these data establish a new bipartite mode of USP7 substrate binding.

Indexed as

Protein Interaction Domains and MotifsBinding SitesCatalytic DomainCell LineDNA-Directed DNA PolymeraseDNA Polymerase iotaHumansKineticsModels, MolecularProtein BindingProtein ConformationRecombinant ProteinsStructure-Activity RelationshipSubstrate SpecificityUbiquitinationUbiquitin-Specific Peptidase 7DNA-Directed DNA PolymeraseDNA Polymerase iotaPOLI protein, humanRecombinant ProteinsUbiquitin-Specific Peptidase 7DeubiquitinationDNA polymerase iotaHerpesvirus-associated ubiquitin-specific proteaseUbiquitin-like domainUbiquitin-specific protease 7

Identifiers

PMID33279577
PMCPMC7873624
OpenAlexW3107324119

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.