Evidence map›Paper›PMID 33277614›Full record

ArticleCommunications biology2020

The substrate specificity of the human TRAPPII complex's Rab-guanine nucleotide exchange factor activity.

Meredith L Jenkins, Noah J Harris, Udit Dalwadi, Kaelin D Fleming, Daniel S Ziemianowicz, Atefeh Rafiei, Emily M Martin, David C Schriemer, Calvin K Yip, John E Burke

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Meredith L JenkinsDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 2Y2, Canada.
Noah J HarrisDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 2Y2, Canada.
Udit DalwadiDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, V6T 1Z3, Canada.
Kaelin D FlemingDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 2Y2, Canada.
Daniel S ZiemianowiczDepartment of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, T2N 4N1, Canada.
Atefeh RafieiDepartment of Chemistry, University of Calgary, Calgary, AB, T2N 4N1, Canada.
Emily M MartinDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 2Y2, Canada.
David C SchriemerDepartment of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, T2N 4N1, Canada.ORCID 0000-0002-5202-1618
Calvin K YipDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, V6T 1Z3, Canada.ORCID 0000-0003-1779-9501
John E BurkeDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 2Y2, Canada. jeburke@uvic.ca.ORCID 0000-0001-7904-9859
University of Victoria · CAUniversity of British Columbia · CAUniversity of Calgary · CA

Funding

CIHR FDN-143228
6 · The paper itself

Abstract

The TRAnsport Protein Particle (TRAPP) complexes act as Guanine nucleotide exchange factors (GEFs) for Rab GTPases, which are master regulators of membrane trafficking in eukaryotic cells. In metazoans, there are two large multi-protein TRAPP complexes: TRAPPII and TRAPPIII, with the TRAPPII complex able to activate both Rab1 and Rab11. Here we present detailed biochemical characterisation of Rab-GEF specificity of the human TRAPPII complex, and molecular insight into Rab binding. GEF assays of the TRAPPII complex against a panel of 20 different Rab GTPases revealed GEF activity on Rab43 and Rab19. Electron microscopy and chemical cross-linking revealed the architecture of mammalian TRAPPII. Hydrogen deuterium exchange MS showed that Rab1, Rab11 and Rab43 share a conserved binding interface. Clinical mutations in Rab11, and phosphomimics of Rab43, showed decreased TRAPPII GEF mediated exchange. Finally, we designed a Rab11 mutation that maintained TRAPPII-mediated GEF activity while decreasing activity of the Rab11-GEF SH3BP5, providing a tool to dissect Rab11 signalling. Overall, our results provide insight into the GTPase specificity of TRAPPII, and how clinical mutations disrupt this regulation.

Indexed as

AnimalsCell LineChromatography, LiquidGuanine Nucleotide Exchange FactorsHumansInsectaModels, MolecularProtein ConformationProtein Isoformsrab GTP-Binding ProteinsSubstrate SpecificityTandem Mass SpectrometryGuanine Nucleotide Exchange FactorsProtein Isoformsrab GTP-Binding Proteins

Identifiers

PMID33277614
PMCPMC7719173
OpenAlexW3108172783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.