ArticleScientific reports2020
Transcriptome comparison between pluripotent and non-pluripotent calli derived from mature rice seeds.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Use of translational fusions to express functional Klebsiella oxytoca dinitrogenase reductase in plant mitochondria.Plant molecular biology · 2026Article
- Synergistic induction of fertilization-independent embryogenesis in rice egg cells by paternal-genome-expressed transcription factors.Nature plants · 2024Article
- An Arabidopsis Cell Culture With Weak Circadian Rhythms Under Constant Light Compared With Constant Dark Can Be Rescued by ELF3.Plant direct · 2024Article
- Elucidating the callus-to-shoot-forming mechanism in Capsicum annuum 'Dempsey' through comparative transcriptome analyses.BMC plant biology · 2024Article
- The Shoot Apical Meristem: An Evolutionary Molding of Higher Plants.International journal of molecular sciences · 2024Review
- Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.Communications biology · 2023Article
- Review
- Embryogenic Stem Cell Identity after Protoplast Isolation fromInternational journal of molecular sciences · 2022Article
- Regeneration of duckweed (Lemna turonifera) involves genetic molecular regulation and cyclohexane release.PloS one · 2022Article
- REGENOMICS: A web-based application for plant REGENeration-associated transcriptOMICS analyses.Computational and structural biotechnology journal · 2022Article
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Authors and funding
7 authors.
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Abstract
In vitro plant regeneration involves a two-step practice of callus formation and de novo organogenesis. During callus formation, cellular competence for tissue regeneration is acquired, but it is elusive what molecular processes and genetic factors are involved in establishing cellular pluripotency. To explore the mechanisms underlying pluripotency acquisition during callus formation in monocot plants, we performed a transcriptomic analysis on the pluripotent and non-pluripotent rice calli using RNA-seq. We obtained a dataset of differentially expressed genes (DEGs), which accounts for molecular processes underpinning pluripotency acquisition and maintenance. Core regulators establishing root stem cell niche were implicated in pluripotency acquisition in rice callus, as observed in Arabidopsis. In addition, KEGG analysis showed that photosynthetic process and sugar and amino acid metabolism were substantially suppressed in pluripotent calli, whereas lipid and antioxidant metabolism were overrepresented in up-regulated DEGs. We also constructed a putative coexpression network related to cellular pluripotency in rice and proposed potential candidates conferring pluripotency in rice callus. Overall, our transcriptome-based analysis can be a powerful resource for the elucidation of the molecular mechanisms establishing cellular pluripotency in rice callus.
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