ArticleBMC plant biology2020
Genome-wide identification, phylogenetic and expression pattern analysis of GATA family genes in Brassica napus.
Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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Who cites it
43 citing papers in PubMed, 68 citations in OpenAlex.
- PlantGATA: a comprehensive database for plant GATA transcription factors.Functional & integrative genomics · 2026Article
- Genome-wide identification of the GATA transcription factor family in ten Cucurbitaceae species and expression analysis of ClGATA genes in watermelon stress responses.BMC genomics · 2026Article
- GATA8-Mediated Antiviral Defence Is Countered by Tomato Chlorosis Virus-Encoded Pathogenicity Protein p27.Molecular plant pathology · 2025Article
- Identification and analysis of the GATA gene family in onion (Allium cepa L.) in response to chromium and salt stress.BMC genomics · 2025Article
- Genome-wide characterization and expression analysis of the GATA transcription factor family in response to salt and drought stress in barley (Frontiers in plant science · 2025Article
- Genome-wide identification ofFrontiers in genetics · 2025Article
- Untargeted metabolomic and transcriptomic analysis in spring and durum wheat reveals potential mechanisms associated with the early stem solidness phenotype and resistance to wheat stem sawfly.Frontiers in plant science · 2025Article
- Comparative analysis of amino acid sequence level in plant GATA transcription factors.Scientific reports · 2024Article
- Genome-Wide Identification ofInternational journal of molecular sciences · 2024Article
- Genome-Wide Profiling of the ACTIN Gene Family and Its Implications for Agronomic Traits inInternational journal of molecular sciences · 2024Article
- Genome-Wide Identification and Expression Pattern Analysis of GATA Gene Family in Orchidaceae.Genes · 2024Article
- Genomic and transcriptome analyses reveal potential contributors to erucic acid biosynthesis in seeds of rapeseed (Brassica napus).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- GATA transcription factor in common bean: A comprehensive genome-wide functional characterization, identification, and abiotic stress response evaluation.Plant molecular biology · 2024Article
- Genome-wide characterization and expression analysis of GATA transcription factors under combination of light wavelengths and drought stress in potato.Plant direct · 2024Article
- Genome-Wide Identification and Characterization of the Sweet Orange (International journal of molecular sciences · 2024Article
- Genome-wide identification of theFrontiers in plant science · 2024Article
- Genome-wide identification of GATA transcription factors in tetraploid potato and expression analysis in differently colored potato flesh.Frontiers in plant science · 2024Article
- Analysis of GATA transcription factors and their expression patterns under abiotic stress in grapevine (Vitis vinifera L.).BMC plant biology · 2023Article
- Article
- Genome-Wide Identification ofInternational journal of molecular sciences · 2023Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
Abstract
backgroundTranscription factors GATAs are involved in plant developmental processes and respond to environmental stresses through binding DNA regulatory regions to regulate their downstream genes. However, little information on the GATA genes in Brassica napus is available. The release of the reference genome of B. napus provides a good opportunity to perform a genome-wide characterization of GATA family genes in rapeseed.
resultsIn this study, 96 GATA genes randomly distributing on 19 chromosomes were identified in B. napus, which were classified into four subfamilies based on phylogenetic analysis and their domain structures. The amino acids of BnGATAs were obvious divergence among four subfamilies in terms of their GATA domains, structures and motif compositions. Gene duplication and synteny between the genomes of B. napus and A. thaliana were also analyzed to provide insights into evolutionary characteristics. Moreover, BnGATAs showed different expression patterns in various tissues and under diverse abiotic stresses. Single nucleotide polymorphisms (SNPs) distributions of BnGATAs in a core collection germplasm are probably associated with functional disparity under environmental stress condition in different genotypes of B. napus.
conclusionThe present study was investigated genomic structures, evolution features, expression patterns and SNP distributions of 96 BnGATAs. The results enrich our understanding of the GATA genes in rapeseed.
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