Evidence map›Paper›PMID 33276449›Full record

ArticleGenes2020

Identification of Novel Genomic Associations and Gene Candidates for Grain Starch Content in Sorghum.

Sirjan Sapkota, J Lucas Boatwright, Kathleen Jordan, Richard Boyles, Stephen Kresovich

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sirjan SapkotaAdvanced Plant Technology Program, Clemson University, Clemson, SC 29634, USA.ORCID 0000-0002-5718-3544
J Lucas BoatwrightAdvanced Plant Technology Program, Clemson University, Clemson, SC 29634, USA.ORCID 0000-0003-4371-2457
Kathleen JordanAdvanced Plant Technology Program, Clemson University, Clemson, SC 29634, USA.
Richard BoylesDepartment of Plant and Environmental Sciences, Clemson University, Clemson, SC 29634, USA.ORCID 0000-0003-1366-7659
Stephen KresovichAdvanced Plant Technology Program, Clemson University, Clemson, SC 29634, USA.
Clemson University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Starch accumulated in the endosperm of cereal grains as reserve energy for germination serves as a staple in human and animal nutrition. Unraveling genetic control for starch metabolism is important for breeding grains with high starch content. In this study, we used a sorghum association panel with 389 individuals and 141,557 single nucleotide polymorphisms (SNPs) to fit linear mixed models (LMM) for identifying genomic regions and potential candidate genes associated with starch content. Three associated genomic regions, one in chromosome (chr) 1 and two novel associations in chr-8, were identified using combination of LMM and Bayesian sparse LMM. All significant SNPs were located within protein coding genes, with SNPs ∼ 52 Mb of chr-8 encoding a Casperian strip membrane protein (CASP)-like protein (

Indexed as

Bayes TheoremChromosome MappingDroughtsEdible GrainEndospermGenome-Wide Association StudyGenomicsHeat-Shock ResponseMetabolic Networks and PathwaysPlant BreedingPlant ProteinsPolymorphism, Single NucleotideReproductionSorghumStarchPlant ProteinsStarchassociation mappingcereal cropsgene networkgenomicsgrain compositionmixed-linear modelssorghumstarch

Identifiers

PMID33276449
PMCPMC7760202
OpenAlexW3107749262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.