Evidence map›Paper›PMID 33275410›Full record

ArticleBiochemistry2020

One-Enzyme Reverse Transcription qPCR Using Taq DNA Polymerase.

Sanchita Bhadra, Andre C Maranhao, Inyup Paik, Andrew D Ellington

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Thermophilic Nucleic Acid Polymerases and Their Application in Xenobiology.International journal of molecular sciences · 2022
    Review
  7. Article
  8. Review
  9. Homebrew reagents for low-cost RT-LAMP.Journal of biomolecular techniques : JBT · 2021
    Article
  10. Homebrew reagents for low cost RT-LAMP.medRxiv : the preprint server for health sciences · 2021
    Article
  11. Article
  12. Article
  13. A blueprint for academic labs to produce SARS-CoV-2 RT-qPCR test kits.medRxiv : the preprint server for health sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sanchita BhadraDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID http://orcid.org/0000-0002-4956-2405
Andre C MaranhaoDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States.
Inyup PaikDepartment of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID http://orcid.org/0000-0001-5938-6380
Andrew D EllingtonCenter for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID http://orcid.org/0000-0001-6246-5338
The University of Texas at Austin · US

Funding

Directed evolution of polymerases that can read and write extremely long sequencesR01EB027202 · NIBIB · UNIVERSITY OF TEXAS AT AUSTIN · PI ELLINGTON, ANDREW D · 2020 to 2024
$1.6M
NIBIB NIH HHS R01 EB027202
6 · The paper itself

Abstract

Taq DNA polymerase, one of the first thermostable DNA polymerases to be discovered, has been typecast as a DNA-dependent DNA polymerase commonly employed for PCR. However, Taq polymerase belongs to the same DNA polymerase superfamily as the Molony murine leukemia virus reverse transcriptase and has in the past been shown to possess reverse transcriptase activity. We report optimized buffer and salt compositions that promote the reverse transcriptase activity of Taq DNA polymerase and thereby allow it to be used as the sole enzyme in TaqMan RT-qPCRs. We demonstrate the utility of Taq-alone RT-qPCRs by executing CDC SARS-CoV-2 N1, N2, and N3 TaqMan RT-qPCR assays that could detect as few as 2 copies/μL of input viral genomic RNA.

Indexed as

AnimalsCOVID-19HumansMiceMoloney murine leukemia virusReverse Transcriptase Polymerase Chain ReactionRNA-Directed DNA PolymeraseSARS-CoV-2Taq PolymeraseRNA-Directed DNA PolymeraseTaq Polymerase

Identifiers

PMID33275410
PMCPMC7757722
OpenAlexW3106835693

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.