Evidence map›Paper›PMID 33275281›Full record

ArticleEuropean journal of immunology2021

PAKC: A novel panel of HLA class I antigen presentation machinery knockout cells from the same genetic origin.

Antonius A de Waard, Tamara Verkerk, Marlieke L M Jongsma, Kelly Hoefakker, Sunesh Sethumadhavan, Carolin Gerke, Sophie Bliss, Xiangrui Kong, George M C Janssen, Arnoud H de Ru and 6 more

Abstract read
In one paragraph

Article in European journal of immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Quantitative nanoscale imaging shows peptide-MHC I complexes are monomeric and spatially regulated in human dendritic cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Dual role of the peptide-loading complex as proofreader and limiter of MHC-I presentation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Antonius A de WaardDepartment of Immunopathology, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-3796-5178
Tamara VerkerkDepartment of Immunopathology, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-9564-6378
Marlieke L M JongsmaDepartment of Immunopathology, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-0695-6623
Kelly HoefakkerDepartment of Immunopathology, Sanquin Research, Amsterdam, The Netherlands.
Sunesh SethumadhavanInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt, Germany.ORCID 0000-0001-6349-6099
Carolin GerkeInstitute of Virology, Medical Center University of Freiburg, Freiburg, Germany.
Sophie BlissDepartment of Immunopathology, Sanquin Research, Amsterdam, The Netherlands.
Xiangrui KongDepartment of Immunopathology, Sanquin Research, Amsterdam, The Netherlands.
George M C JanssenCenter for Proteomics and Metabolomics, LUMC, Leiden, The Netherlands.
Arnoud H de RuCenter for Proteomics and Metabolomics, LUMC, Leiden, The Netherlands.
Frans H J ClaasDepartment of Immunology, LUMC, Leiden, The Netherlands.ORCID 0000-0003-4157-6201
Arend MulderDepartment of Immunology, LUMC, Leiden, The Netherlands.ORCID 0000-0001-7805-7064
Robert TampéInstitute of Biochemistry, Biocenter, Goethe University Frankfurt, Frankfurt, Germany.ORCID 0000-0002-0403-2160
Peter A van VeelenCenter for Proteomics and Metabolomics, LUMC, Leiden, The Netherlands.ORCID 0000-0002-7898-9408
Anne HaleniusInstitute of Virology, Medical Center University of Freiburg, Freiburg, Germany.ORCID 0000-0001-6335-1017
Robbert M SpaapenDepartment of Immunopathology, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-1329-8606

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A single model system for integrative studies on multiple facets of antigen presentation is lacking. PAKC is a novel panel of ten cell lines knocked out for individual components of the HLA class I antigen presentation pathway. PAKC will accelerate HLA-I research in the fields of oncology, infectiology, and autoimmunity.

Indexed as

Antigen PresentationAutoimmunityHistocompatibility Antigens Class IHumansNeoplasmsSignal TransductionHistocompatibility Antigens Class Iantigen presentationAPMCRISPR/Cas9HLA class IMHC

Identifiers

PMID33275281
PMCPMC7986913

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.