Evidence map›Paper›PMID 33272927›Full record

ArticleCancer research2021

Patterns of Human Leukocyte Antigen Class I and Class II Associations and Cancer.

Zhiwei Liu, Andriy Derkach, Kelly J Yu, Meredith Yeager, Yu-Sun Chang, Chien-Jen Chen, Ulf Gyllensten, Qing Lan, Mei-Hsuan Lee, James D McKay and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. A novel causal model for nasopharyngeal carcinoma.Cancer causes & control : CCC · 2022
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Zhiwei Liu *Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland. zhiwei.liu@nih.gov.
Andriy Derkach *Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland.
Kelly J YuDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland.
Meredith YeagerDivision of Cancer Epidemiology and Genetics, Cancer Genomics Research Laboratory, National Cancer Institute, Bethesda, Maryland.
Yu-Sun ChangDepartment of Microbiology and Immunology and Molecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan.
Chien-Jen ChenGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Ulf GyllenstenDepartment of Immunology, Genetics and Pathology, Science for Life Laboratory Uppsala, Uppsala University, Uppsala, Sweden.
Qing LanDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland.
Mei-Hsuan LeeInstitute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan.
James D McKayInternational Agency for Research on Cancer, World Health Organization, Lyon, France.
Nathaniel RothmanDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland.
Hwai-I YangGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Allan HildesheimDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland.
Ruth M PfeifferDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland.
Academia Sinica · TW

Funding

Methods for Epidemiology StudiesZIACP010181 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ALBERT, PAUL · 2009 to 2025
$34.8M
Viral and Host Factors Associated with NPCZIACP010211 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ENGELS, ERIC A · 2010 to 2025
$6.1M
Intramural NIH HHS ZIA CP010211World Health Organization 001
6 · The paper itself

Abstract

Human leukocyte antigen (HLA) gene variation is associated with risk of cancers, particularly those with infectious etiology or hematopoietic origin, given its role in immune presentation. Previous studies focused primarily on HLA allele/haplotype-specific associations. To answer whether associations are driven by HLA class I (essential for T-cell cytotoxicity) or class II (important for T-cell helper responses) genes, we analyzed GWAS from 24 case-control studies and consortia comprising 27 cancers (totaling >71,000 individuals). Associations for most cancers with infectious etiology or of hematopoietic origin were driven by multiple HLA regions, suggesting that both cytotoxic and helper T-cell responses are important. Notable exceptions were observed for nasopharyngeal carcinoma, an EBV-associated cancer, and CLL/SLL forms of non-Hodgkin lymphomas; these cancers were associated with HLA class I region only and HLA class II region only, implying the importance of cytotoxic T-cell responses for the former and CD4

Indexed as

AllelesCase-Control StudiesFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHaplotypesHematologic NeoplasmsHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensHumansMaleNeoplasmsTumor Virus InfectionsHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA Antigens

Identifiers

PMID33272927
PMCPMC9986718
OpenAlexW3107585998

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.