Evidence map›Paper›PMID 33271061›Full record

ArticleCell2020

Guide RNA Categorization Enables Target Site Choice in Tn7-CRISPR-Cas Transposons.

Michael T Petassi, Shan-Chi Hsieh, Joseph E Peters

Abstract read
In one paragraph

Article in Cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Michael T PetassiDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Shan-Chi HsiehDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Joseph E PetersDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA. Electronic address: joe.peters@cornell.edu.

Funding

CRISPR/Cas-directed transposition in Tn7-like elementsR01GM129118 · NIGMS · CORNELL UNIVERSITY · PI PETERS, JOSEPH E · 2019 to 2022
$1.2M
NIGMS NIH HHS R01 GM129118
6 · The paper itself

Abstract

CRISPR-Cas defense systems have been coopted multiple times in nature for guide RNA-directed transposition by Tn7-like elements. Prototypic Tn7 uses dedicated proteins for two targeting pathways: one targeting a neutral and conserved attachment site in the chromosome and a second directing transposition into mobile plasmids facilitating cell-to-cell transfer. We show that Tn7-CRISPR-Cas elements evolved a system of guide RNA categorization to accomplish the same two-pathway lifestyle. Multiple mechanisms allow functionally distinct guide RNAs for transposition: a conventional system capable of acquiring guide RNAs to new plasmid and phage targets and a second providing long-term memory for access to chromosomal sites upon entry into a new host. Guide RNAs are privatized to be recognized only by the transposon-adapted system via sequence specialization, mismatch tolerance, and selective regulation to avoid toxic self-targeting by endogenous CRISPR-Cas defense systems. This information reveals promising avenues to engineer guide RNAs for enhanced CRISPR-Cas functionality for genome modification.

Indexed as

Bacterial ProteinsBase SequenceCRISPR-Cas SystemsDNA Transposable ElementsGammaproteobacteriaPhylogenyPromoter Regions, GeneticRNA, Guide, CRISPR-Cas SystemsTranscription FactorsZygoteBacterial ProteinsDNA Transposable ElementsRNA, Guide, CRISPR-Cas SystemsTranscription FactorsCRISPR regulationguide RNA categorizationRNA-directed transpositionself-targeting spacers

Identifiers

PMID33271061
PMCPMC7770071

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.