Evidence map›Paper›PMID 33270986›Full record

ArticleEMBO molecular medicine2021

Machine learning suggests polygenic risk for cognitive dysfunction in amyotrophic lateral sclerosis.

Katerina Placek, Michael Benatar, Joanne Wuu, Evadnie Rampersaud, Laura Hennessy, Vivianna M Van Deerlin, Murray Grossman, David J Irwin, Lauren Elman, Leo McCluskey and 25 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in EMBO molecular medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. A neuromuscular clinician's primer on machine learning.Journal of neuromuscular diseases · 2026
    Review
  3. Article
  4. Article
  5. Mild cognitive impairment in amyotrophic lateral sclerosis: current view.Journal of neural transmission (Vienna, Austria : 1996) · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Cumulative Genetic Score andNeurology. Genetics · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 14 institutions in 1 country.

Katerina PlacekDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.ORCID 0000-0002-0832-6684
Michael BenatarDepartment of Neurology, Leonard M. Miller School of Medicine, University of Miami, Miami, FL, USA.
Joanne WuuDepartment of Neurology, Leonard M. Miller School of Medicine, University of Miami, Miami, FL, USA.
Evadnie RampersaudCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Laura HennessyDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Vivianna M Van DeerlinDepartment of Pathology & Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Murray GrossmanDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
David J IrwinDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Lauren ElmanDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Leo McCluskeyDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Colin QuinnDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Volkan GranitDepartment of Neurology, Leonard M. Miller School of Medicine, University of Miami, Miami, FL, USA.
Jeffrey M StatlandDepartment of Neurology, University of Kansas Medical Center, Kansas City, KS, USA.
Ted M BurnsDepartment of Neurology, University of Virginia Health System, Charlottesville, VA, USA.
John RavitsDepartment of Neurosciences, University of California San Diego, San Diego, CA, USA.
Andrea SwensonDepartment of Neurology, University of Iowa, Iowa City, IA, USA.
Jon KatzForbes Norris ALS Center, California Pacific Medical Center, San Francisco, CA, USA.
Erik P PioroDepartment of Neurology, Cleveland Clinic, Cleveland, OH, USA.
Carlayne JacksonDepartment of Neurology, University of Texas Health Science Center, San Antonio, TX, USA.
James CaressDepartment of Neurology, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
Yuen SoDepartment of Neurology, Stanford University Medical Center, San Jose, CA, USA.
Samuel MaiserDepartment of Neurology, University of Minnesota Medical Center, Minneapolis, MN, USA.
David WalkDepartment of Neurology, University of Minnesota Medical Center, Minneapolis, MN, USA.
Edward B LeeDepartment of Pathology & Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
John Q TrojanowskiDepartment of Pathology & Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Philip CookPenn Image Computing Science Laboratory (PICSL), Department of Radiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
James GeePenn Image Computing Science Laboratory (PICSL), Department of Radiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Jin ShaDepartment of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Adam C NajDepartment of Pathology & Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Rosa RademakersDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0002-4049-0863
CReATe ConsortiumRare Diseases Clinical Research Network, National Institutes of Health, Bethesda, MD, USA.
Wenan ChenCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Gang WuCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.
J Paul TaylorCenter for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Corey T McMillanDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.ORCID 0000-0002-7581-6405
University of Pennsylvania · USSt. Jude Children's Research Hospital · USUniversity of Miami · USUniversity of Minnesota Medical Center · USCalifornia Pacific Medical Center · USCleveland Clinic · USJacksonville College · USStanford Medicine · USThe University of Texas Health Science Center at San Antonio · USUniversity of California San Diego · USUniversity of Iowa · USUniversity of Kansas Medical Center · USUniversity of Virginia Health System · USWake Forest University · US

Funding

Transgenic Mouse Models of Tau PathologiesP01AG017586 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M · 2000 to 2021
$37.3M
Uncovering new genes and disease modifiers for ALS and related disordersU54NS092091 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MICHAEL E. SHY · 2014 to 2026
$19.8M
Understanding Environmental Contributions to Heterogeneity in bvFTD.P01AG066597 · NIA · UNIVERSITY OF PENNSYLVANIA · PI David John Irwin, Corey T McMillan · 2020 to 2026
$18.8M
Pleiotropy GWAS of Alzheimer's DiseaseR01AG054060 · NIA · UNIVERSITY OF PENNSYLVANIA · PI NAJ, ADAM CHRISTIAN · 2016 to 2020
$2.1M
Early anatomic markers and genetic risk factors for frontotemporal degeneration in amyotrophic lateral sclerosisF31NS106754 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI PLACEK, KATERINA · 2018 to 2020
$109k
NIA NIH HHS P01 AG017586NIA NIH HHS P01 AG066597NIA NIH HHS R01 AG054060NINDS NIH HHS F31 NS106754NINDS NIH HHS U54 NS092091
6 · The paper itself

Abstract

Amyotrophic lateral sclerosis (ALS) is a multi-system disease characterized primarily by progressive muscle weakness. Cognitive dysfunction is commonly observed in patients; however, factors influencing risk for cognitive dysfunction remain elusive. Using sparse canonical correlation analysis (sCCA), an unsupervised machine-learning technique, we observed that single nucleotide polymorphisms collectively associate with baseline cognitive performance in a large ALS patient cohort (N = 327) from the multicenter Clinical Research in ALS and Related Disorders for Therapeutic Development (CReATe) Consortium. We demonstrate that a polygenic risk score derived using sCCA relates to longitudinal cognitive decline in the same cohort and also to in vivo cortical thinning in the orbital frontal cortex, anterior cingulate cortex, lateral temporal cortex, premotor cortex, and hippocampus (N = 90) as well as post-mortem motor cortical neuronal loss (N = 87) in independent ALS cohorts from the University of Pennsylvania Integrated Neurodegenerative Disease Biobank. Our findings suggest that common genetic polymorphisms may exert a polygenic contribution to the risk of cortical disease vulnerability and cognitive dysfunction in ALS.

Indexed as

Amyotrophic Lateral SclerosisCognitive DysfunctionFrontotemporal DementiaNeurodegenerative DiseasesHumansMachine Learningamyotrophic lateral sclerosiscognitionfrontotemporal dementiamachine learningpolygenic score

Identifiers

PMID33270986
PMCPMC7799365
OpenAlexW3107333380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.