Evidence map›Paper›PMID 33270761›Full record

ArticlePloS one2020

Using the SNAP-Tag technology to easily measure and demonstrate apoptotic changes in cancer and blood cells with different dyes.

Mira Woitok, Elena Grieger, Olusiji A Akinrinmade, Susanne Bethke, Anh Tuan Pham, Christoph Stein, Rolf Fendel, Rainer Fischer, Stefan Barth, Judith Niesen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Mira WoitokFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Elena GriegerFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Olusiji A AkinrinmadeInstitute of Infectious Disease and Molecular Medicine, Department of Integrative Biomedical Sciences, University of Cape Town, Observatory, Cape Town, South Africa.
Susanne BethkeFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Anh Tuan PhamFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Christoph SteinFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Rolf FendelFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Rainer FischerFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Stefan BarthFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.
Judith NiesenFraunhofer Institute for Molecular Biology and Applied Ecology (IME), Aachen, Germany.ORCID 0000-0003-1050-2859
Fraunhofer Institute for Molecular Biology and Applied Ecology · DEUniversity of Cape Town · ZAUniversität Hamburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In vitro and ex vivo development of novel therapeutic agents requires reliable and accurate analyses of the cell conditions they were preclinical tested for, such as apoptosis. The detection of apoptotic cells by annexin V (AV) coupled to fluorophores has often shown limitations in the choice of the dye due to interference with other fluorescent-labeled cell markers. The SNAP-tag technology is an easy, rapid and versatile method for functionalization of proteins and was therefore used for labeling AV with various fluorophores. We generated the fusion protein AV-SNAP and analyzed its capacity for the specific display of apoptotic cells in various assays with therapeutic agents. AV-SNAP showed an efficient coupling reaction with five different fluorescent dyes. Two selected fluorophores were tested with suspension, adherent and peripheral blood cells, treated by heat-shock or apoptosis-inducing therapeutic agents. Flow cytometry analysis of apoptotic cells revealed a strong visualization using AV-SNAP coupled to these two fluorophores exemplary, which was comparable to a commercial AV-Assay-kit. The combination of the apoptosis-specific binding protein AV with the SNAP-tag provides a novel solid method to facilitate protein labeling using several, easy to change, fluorescent dyes at once. It avoids high costs and allows an ordinary exchange of dyes and easier use of other fluorescent-labeled cell markers, which is of high interest for the preclinical testing of therapeutic agents in e.g. cancer research.

Indexed as

Affinity LabelsAnnexin A5ApoptosisBlood CellsCell Line, TumorFlow CytometryFluorescent DyesHumansNeoplasmsProteinsStaining and LabelingTechnologyAffinity LabelsAnnexin A5Fluorescent DyesProteins

Identifiers

PMID33270761
PMCPMC7714129
OpenAlexW3108814821

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.