Evidence map›Paper›PMID 33269542›Full record

ArticleMicrobiologyOpen2021

Pantoea ananatis carotenoid production confers toxoflavin tolerance and is regulated by Hfq-controlled quorum sensing.

Okhee Choi, Byeongsam Kang, Yongsang Lee, Yeyeong Lee, Jinwoo Kim

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Comparative genomics ofMicrobial genomics · 2026
    Article
  2. Article
  3. Exploration of carotenoid-producingCurrent research in microbial sciences · 2025
    Article
  4. Radiotolerant endophytic bacteria and analysis of the effects ofBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  5. Review
  6. Article
  7. Comparative genomics of a novelMicrobial genomics · 2024
    Article
  8. RpoS-Regulated Genes and Phenotypes in the Phytopathogenic BacteriumInternational journal of molecular sciences · 2023
    Article
  9. Draft genome sequences ofMicrobiology resource announcements · 2023
    Article
  10. Quorum-quenching potential of recombinant PvdQ-engineered bacteria for biofilm formation.International microbiology : the official journal of the Spanish Society for Microbiology · 2023
    Article
  11. Article
  12. Microorganisms · 2023
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Okhee ChoiInstitute of Agriculture and Life Science, Gyeongsang National University, Jinju, Korea.
Byeongsam KangDivision of Applied Life Science, Gyeongsang National University, Jinju, Korea.
Yongsang LeeDivision of Applied Life Science, Gyeongsang National University, Jinju, Korea.
Yeyeong LeeDepartment of Plant Medicine, Gyeongsang National University, Jinju, Korea.
Jinwoo KimInstitute of Agriculture and Life Science, Gyeongsang National University, Jinju, Korea.ORCID 0000-0003-1104-8088
Gyeongsang National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carotenoids are widely used in functional foods, cosmetics, and health supplements, and their importance and scope of use are continuously expanding. Here, we characterized carotenoid biosynthetic genes of the plant-pathogenic bacterium Pantoea ananatis, which carries a carotenoid biosynthetic gene cluster (including crtE, X, Y, I, B, and Z) on a plasmid. Reverse transcription-polymerase chain reaction (RT-PCR) analysis revealed that the crtEXYIB gene cluster is transcribed as a single transcript and crtZ is independently transcribed in the opposite direction. Using splicing by overlap extension with polymerase chain reaction (SOE by PCR) based on asymmetric amplification, we reassembled crtE-B, crtE-B-I, and crtE-B-I-Y. High-performance liquid chromatography confirmed that Escherichia coli expressing the reassembled crtE-B, crtE-B-I, and crtE-B-I-Y operons produced phytoene, lycopene, and β-carotene, respectively. We found that the carotenoids conferred tolerance to UV radiation and toxoflavin. Pantoea ananatis shares rice environments with the toxoflavin producer Burkholderia glumae and is considered to be the first reported example of producing and using carotenoids to withstand toxoflavin. We confirmed that carotenoid production by P. ananatis depends on RpoS, which is positively regulated by Hfq/ArcZ and negatively regulated by ClpP, similar to an important regulatory network of E. coli (Hfq

Indexed as

Bacterial ProteinsCarotenoidsEndopeptidase ClpEscherichia coliEscherichia coli ProteinsHost Factor 1 ProteinMultigene FamilyPantoeaPlasmidsPyrimidinonesQuorum SensingSigma FactorTriazinesUltraviolet RaysBacterial ProteinsCarotenoidsClpP protease, E coliEndopeptidase ClpEscherichia coli ProteinsHost Factor 1 ProteinPyrimidinonesSigma Factorsigma factor KatF protein, BacteriatoxoflavinTriazinescarotenoidClpPHfqPantoea ananatisquorum sensingRpoS

Identifiers

PMID33269542
PMCPMC7883899
OpenAlexW3107776546

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.