Evidence map›Paper›PMID 33269293›Full record

ArticleOpen forum infectious diseases2020

Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.

Shichina Kannambath, Joseph N Jarvis, Rachel M Wake, Nicky Longley, Angela Loyse, Vicky Matzaraki, Raúl Aguirre-Gamboa, Cisca Wijmenga, Ronan Doyle, Maria Paximadis and 7 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Molecular Diagnostics ofDiseases (Basel, Switzerland) · 2024
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 5 countries.

Shichina KannambathInstitute of Infection and Immunity, St George's University of London, London, United Kingdom.
Joseph N JarvisDepartment of Clinical Research, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Rachel M WakeInstitute of Infection and Immunity, St George's University of London, London, United Kingdom.
Nicky LongleyInstitute of Infection and Immunity, St George's University of London, London, United Kingdom.
Angela LoyseInstitute of Infection and Immunity, St George's University of London, London, United Kingdom.
Vicky MatzarakiUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, the Netherlands.
Raúl Aguirre-GamboaUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, the Netherlands.
Cisca WijmengaUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, the Netherlands.
Ronan DoyleDepartment of Clinical Research, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Maria PaximadisCentre for HIV and STIs, National Institute for Communicable Diseases and Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Caroline T TiemessenCentre for HIV and STIs, National Institute for Communicable Diseases and Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Vinod KumarUniversity of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, the Netherlands.
Alan PittmanInstitute of Infection and Immunity, St George's University of London, London, United Kingdom.
Graeme MeintjesDepartment of Medicine and Wellcome Centre for Infectious Diseases Research in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Thomas S HarrisonInstitute of Infection and Immunity, St George's University of London, London, United Kingdom.
Mihai G NeteaDepartment of Internal Medicine and Radboud Center for Infectious Diseases, Radboud University, Nijmegen, the Netherlands.
Tihana BicanicInstitute of Infection and Immunity, St George's University of London, London, United Kingdom.ORCID 0000-0002-2676-838X
St George's, University of London · GBUniversity Medical Center Groningen · NLLondon School of Hygiene & Tropical Medicine · GBUniversity of Cape Town · ZAUniversity of the Witwatersrand · ZASt Thomas' Hospital · GBUniversity of Bonn · DE

Funding

Department of Health RP-2017-08-ST2-012Medical Research Council G0501476Medical Research Council MC_PC_MR/P006922/1Wellcome Trust 098316
6 · The paper itself

Abstract

background

methodsWe analyzed genome-wide single-nucleotide polymorphism (SNP) genotype data from 524 patients of African descent: 243 cases (advanced HIV with cryptococcal antigenemia and/or cryptococcal meningitis) and 281 controls (advanced HIV, no history of cryptococcosis, negative serum cryptococcal antigen).

resultsSix loci upstream of the colony-stimulating factor 1 (

conclusionsThis first genome-wide association study of susceptibility to cryptococcosis has identified novel and immunologically relevant susceptibility loci, which may help define novel strategies for prevention or immunotherapy of HIV-associated cryptococcal meningitis.

Indexed as

AfricaCryptococcal meningitisgenome-wide association study (GWAS)HIVmacrophage colony-stimulating factor (M-CSF)

Identifiers

PMID33269293
PMCPMC7686661
OpenAlexW3108623254

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.