Evidence map›Paper›PMID 33266228›Full record

ArticleInternational journal of molecular sciences2020

Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane.

Augusto Lima Diniz, Danielle Izilda Rodrigues da Silva, Carolina Gimiliani Lembke, Maximiller Dal-Bianco Lamas Costa, Felipe Ten-Caten, Forrest Li, Romel Duarte Vilela, Marcelo Menossi, Doreen Ware, Lauricio Endres and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Pooled it
  2. Enhanced expression of theGM crops & food · 2026
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  15. Drought stress inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Augusto Lima DinizDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP 05508-000, Brazil.ORCID 0000-0002-0407-1039
Danielle Izilda Rodrigues da SilvaDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP 05508-000, Brazil.
Carolina Gimiliani LembkeDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP 05508-000, Brazil.
Maximiller Dal-Bianco Lamas CostaDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP 05508-000, Brazil.
Felipe Ten-CatenDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP 05508-000, Brazil.ORCID 0000-0001-7771-1490
Forrest LiCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Romel Duarte VilelaCentro de Ciências Agrárias, Universidade Federal de Alagoas, Rio Largo, AL 57100-000, Brazil.
Marcelo MenossiInstituto de Biologia, Universidade Estadual de Campinas, Campinas, SP 13083-862, Brazil.ORCID 0000-0002-9211-3787
Doreen WareCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.ORCID 0000-0002-8125-3821
Lauricio EndresCentro de Ciências Agrárias, Universidade Federal de Alagoas, Rio Largo, AL 57100-000, Brazil.
Glaucia Mendes SouzaDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP 05508-000, Brazil.
Universidade de São Paulo · BRCold Spring Harbor Laboratory · USUniversidade Federal de Alagoas · BRUniversidade Estadual de Campinas (UNICAMP) · BRUniversidade Federal de Viçosa · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 304 360/2014-7Fundação de Amparo à Pesquisa do Estado de São Paulo 2013/13659-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/50921-8Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/01764-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2017/02270-6Fundação de Amparo à Pesquisa do Estado de São Paulo 2017/02842-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2019/15852-9U.S. Department of Agriculture CRIS 8062-2100-044)
6 · The paper itself

Abstract

The ability to expand crop plantations without irrigation is a major goal to increase agriculture sustainability. To achieve this end, we need to understand the mechanisms that govern plant growth responses under drought conditions. In this study, we combined physiological, transcriptomic, and genomic data to provide a comprehensive picture of drought and recovery responses in the leaves and roots of sugarcane. Transcriptomic profiling using oligoarrays and RNA-seq identified 2898 (out of 21,902) and 46,062 (out of 373,869) transcripts as differentially expressed, respectively. Co-expression analysis revealed modules enriched in photosynthesis, small molecule metabolism, alpha-amino acid metabolism, trehalose biosynthesis, serine family amino acid metabolism, and carbohydrate transport. Together, our findings reveal that carbohydrate metabolism is coordinated with the degradation of amino acids to provide carbon skeletons to the tricarboxylic acid cycle. This coordination may help to maintain energetic balance during drought stress adaptation, facilitating recovery after the stress is alleviated. Our results shed light on candidate regulatory elements and pave the way to biotechnology strategies towards the development of drought-tolerant sugarcane plants.

Indexed as

Carbohydrate MetabolismDroughtsEnergy MetabolismAdaptation, PhysiologicalAmino AcidsComputational BiologyGene Expression ProfilingGene Expression Regulation, PlantGene Regulatory NetworksMetabolic Networks and PathwaysSaccharumTranscriptomeAmino Acidsco-expression networkplant stressTFBStranscriptometricarboxylic acid cycle

Identifiers

PMID33266228
PMCPMC7729667
OpenAlexW3109511596

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.