Evidence map›Paper›PMID 33266080›Full record

ArticleViruses2020

Binding of CCCTC-Binding Factor (CTCF) to the Minute Virus of Mice Genome Is Important for Proper Processing of Viral P4-Generated Pre-mRNAs.

Maria Boftsi, Kinjal Majumder, Lisa R Burger, David J Pintel

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Maria BoftsiPathobiology Area Graduate Program, Christopher S. Bond Life Sciences Center, School of Medicine, University of Missouri-Columbia, Columbia, MO 65211, USA.
Kinjal MajumderChristopher S. Bond Life Sciences Center, Department of Molecular Microbiology and Immunology, School of Medicine, University of Missouri-Columbia, Columbia, MO 65211, USA.ORCID 0000-0002-1898-8251
Lisa R BurgerChristopher S. Bond Life Sciences Center, Department of Molecular Microbiology and Immunology, School of Medicine, University of Missouri-Columbia, Columbia, MO 65211, USA.
David J PintelChristopher S. Bond Life Sciences Center, Department of Molecular Microbiology and Immunology, School of Medicine, University of Missouri-Columbia, Columbia, MO 65211, USA.ORCID 0000-0002-9959-2848
University of Missouri · US

Funding

Parvovirus RNA Processing and Gene Expression StrategiesR01AI046458 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI PINTEL, DAVID J. · 2000 to 2018
$4.6M
The parvovirus-induced DNA damage response and cell cycle perturbationsR01AI116595 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI PINTEL, DAVID J. · 2016 to 2020
$1.9M
How does a viral pathogen manipulate DNA Damage Responses to promote infection?R00AI148511 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MAJUMDER, KINJAL · 2022 to 2023
$498k
How does a viral pathogen manipulate the DNA Damage Response to promote successful viral infection?K99AI148511 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MAJUMDER, KINJAL · 2020 to 2021
$207k
Interaction between parvovirus replication and the cellular DNA-damage responseF32AI131468 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI MAJUMDER, KINJAL · 2018 to 2020
$171k
NIAID NIH HHS F32 AI131468NIAID NIH HHS K99 AI148511NIAID NIH HHS R00 AI148511NIAID NIH HHS R01 AI046458NIAID NIH HHS R01 AI116595
6 · The paper itself

Abstract

Specific chromatin immunoprecipitation of salt-fractionated infected cell extracts has demonstrated that the CCCTC-binding factor (CTCF), a highly conserved, 11-zinc-finger DNA-binding protein with known roles in cellular and viral genome organization and gene expression, specifically binds the genome of Minute Virus of Mice (MVM). Mutations that diminish binding of CTCF to MVM affect processing of the P4-generated pre-mRNAs. These RNAs are spliced less efficiently to generate the R1 mRNA, and definition of the NS2-specific exon upstream of the small intron is reduced, leading to relatively less R2 and the generation of a novel exon-skipped product. These results suggest a model in which CTCF is required for proper engagement of the spliceosome at the MVM small intron and for the first steps of processing of the P4-generated pre-mRNA.

Indexed as

Genome, ViralHost-Pathogen InteractionsAnimalsCCCTC-Binding FactorDNA-Binding ProteinsFluorescent Antibody TechniqueGene Expression Regulation, ViralHumansIntronsMiceMinute Virus of MiceModels, BiologicalMutationNucleoproteinsParvoviridae InfectionsProtein BindingCCCTC-Binding FactorDNA-Binding ProteinsNucleoproteinsRNA, MessengerRNA PrecursorsRNA, ViralViral Proteinsgene expressionminute virus of miceparvovirusRNA processing

Identifiers

PMID33266080
PMCPMC7760686
OpenAlexW3107336981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.