Evidence map›Paper›PMID 33265975›Full record

ArticleMicroorganisms2020

Use of Permanent Wall-Deficient Cells as a System for the Discovery of New-to-Nature Metabolites.

Shraddha Shitut, Güniz Özer Bergman, Alexander Kros, Daniel E Rozen, Dennis Claessen

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Development of a RobustMicroorganisms · 2024
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shraddha ShitutOrigins Centre, Nijenborgh 7, 9747 AG Groningen, The Netherlands.ORCID 0000-0002-2759-6508
Güniz Özer BergmanInstitute of Biology, Leiden University, 2333 BE Leiden, The Netherlands.
Alexander KrosLeiden Institute of Chemistry, Leiden University, 2333 CC Leiden, The Netherlands.ORCID 0000-0002-3983-3048
Daniel E RozenInstitute of Biology, Leiden University, 2333 BE Leiden, The Netherlands.
Dennis ClaessenInstitute of Biology, Leiden University, 2333 BE Leiden, The Netherlands.ORCID 0000-0002-0789-2633
Leiden University · NL

Funding

Nederlandse Organisatie voor Wetenschappelijk Onderzoek VI.C.192.002
6 · The paper itself

Abstract

Filamentous actinobacteria are widely used as microbial cell factories to produce valuable secondary metabolites, including the vast majority of clinically relevant antimicrobial compounds. Secondary metabolites are typically encoded by large biosynthetic gene clusters, which allow for a modular approach to generating diverse compounds through recombination. Protoplast fusion is a popular method for whole genome recombination that uses fusion of cells that are transiently wall-deficient. This process has been applied for both inter- and intraspecies recombination. An important limiting step in obtaining diverse recombinants from fused protoplasts is regeneration of the cell wall, because this forces the chromosomes from different parental lines to segregate, thereby preventing further recombination. Recently, several labs have gained insight into wall-deficient bacteria that have the ability to proliferate without their cell wall, known as L-forms. Unlike protoplasts, L-forms can stably maintain multiple chromosomes over many division cycles. Fusion of such L-forms would potentially allow cells to express genes from both parental genomes while also extending the time for recombination, both of which can contribute to an increased chemical diversity. Here, we present a perspective on how L-form fusion has the potential to become a platform for novel compound discovery and may thus help to overcome the antibiotic discovery void.

Indexed as

actinomycetescell wall-deficiencyheteroploidynovel compound discoveryprotoplast fusionsecondary metabolites

Identifiers

PMID33265975
PMCPMC7760116
OpenAlexW3107499050

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.