Evidence map›Paper›PMID 33264630›Full record

ArticleCell reports2020

Rare Variant Burden Analysis within Enhancers Identifies CAV1 as an ALS Risk Gene.

Johnathan Cooper-Knock, Sai Zhang, Kevin P Kenna, Tobias Moll, John P Franklin, Samantha Allen, Helia Ghahremani Nezhad, Alfredo Iacoangeli, Nancy Y Yacovzada, Chen Eitan and 15 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 8 institutions in 5 countries.

Johnathan Cooper-KnockSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK. Electronic address: j.cooper-knock@sheffield.ac.uk.
Sai ZhangStanford Center for Genomics and Personalized Medicine, Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Kevin P KennaDepartment of Neurology, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, the Netherlands.
Tobias MollSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK.
John P FranklinSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK.
Samantha AllenSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK.
Helia Ghahremani NezhadSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK.
Alfredo IacoangeliDepartment of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
Nancy Y YacovzadaDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Chen EitanDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Eran HornsteinDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Eran ElhaikDepartment of Biology, Lund University, Lund, Sweden.
Petra CeladovaSheffield Institute for Nucleic Acids, University of Sheffield, Sheffield, UK.
Daniel BoseSheffield Institute for Nucleic Acids, University of Sheffield, Sheffield, UK.
Sali FarhanAnalytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Simon FishilevichDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Doron LancetDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Karen E MorrisonFaculty of Medicine, University of Southampton, Southampton, UK.
Christopher E ShawDepartment of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
Ammar Al-ChalabiDepartment of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
Project MinE ALS Sequencing Consortium
Jan H VeldinkDepartment of Neurology, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, the Netherlands.
Janine KirbySheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK.
Michael P SnyderStanford Center for Genomics and Personalized Medicine, Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Pamela J ShawSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield, UK. Electronic address: pamela.shaw@sheffield.ac.uk.
University of Sheffield · GBKing's College London · GBUniversity Medical Center Utrecht · NLWeizmann Institute of Science · ILUniversity of Southampton · GBStanford University · USHarvard University · USLund University · SE

Funding

Identification of genes causative for familial ALS gene using exome sequencingR01NS073873 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LANDERS, JOHN E · 2011 to 2019
$4.6M
Identification and Characterization of ALS/FTD Associated Variants Using Whole Genome SequencingR56NS073873 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LANDERS, JOHN E · 2020 to 2020
$586k
Medical Research Council G0600974Medical Research Council MR/L501529/1Medical Research Council MR/R024804/1Motor Neurone Disease Association ALCHALABI-DOBSON/APR14/829-791NINDS NIH HHS R01 NS073873NINDS NIH HHS R56 NS073873Wellcome TrustWellcome Trust 213501/Z/18/ZWellcome Trust 216596/Z/19/Z
6 · The paper itself

Abstract

Amyotrophic lateral sclerosis (ALS) is an incurable neurodegenerative disease. CAV1 and CAV2 organize membrane lipid rafts (MLRs) important for cell signaling and neuronal survival, and overexpression of CAV1 ameliorates ALS phenotypes in vivo. Genome-wide association studies localize a large proportion of ALS risk variants within the non-coding genome, but further characterization has been limited by lack of appropriate tools. By designing and applying a pipeline to identify pathogenic genetic variation within enhancer elements responsible for regulating gene expression, we identify disease-associated variation within CAV1/CAV2 enhancers, which replicate in an independent cohort. Discovered enhancer mutations reduce CAV1/CAV2 expression and disrupt MLRs in patient-derived cells, and CRISPR-Cas9 perturbation proximate to a patient mutation is sufficient to reduce CAV1/CAV2 expression in neurons. Additional enrichment of ALS-associated mutations within CAV1 exons positions CAV1 as an ALS risk gene. We propose CAV1/CAV2 overexpression as a personalized medicine target for ALS.

Indexed as

Amyotrophic Lateral SclerosisAnimalsCaveolin 1Genetic Predisposition to DiseaseGenetic VariationGenomeHumansCAV1 protein, humanCaveolin 1amyotrophic lateral sclerosisCAV1CAV2gene enhancersmembrane lipid raftsnon-coding DNAwhole-genome sequencing

Identifiers

PMID33264630
PMCPMC7710676
OpenAlexW3107500297

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.